Plasmid NZ_CP073622.1
Sequence
Nucleotide Information
| Accession | NZ_CP073622.1 |
|---|---|
| Description | Escherichia coli strain CE2050 plasmid pCE2050_A, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 115443 bp |
| GC Content | 0.51 % |
| Created at NCBI | Nov. 19, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 18819224 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 36.15S;150.13E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | -36.15/150.13 |
| Address | Brou-Dalmeny Beach Day Use, Brou Lake Road, Bodalla, Eurobodalla Shire Council, New South Wales, 2545, Australia |
ECOSYSTEM
| Original Query | Chroicocephalus novaehollandiae,cloacal swab |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | senB | copy | ||
| PGAG | traI | copy | ||
| PGAG | traD | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | traT | copy | ||
| PGAG | IS5-like element IS5 family transposase | copy | ||
| PGAG | traG | copy | ||
| PGAG | traH | copy | ||
| PGAG | trbF | copy | ||
| PGAG | trbJ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 137 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000096__NC_019117_00097 | IncFIB | 62609 | 63586 | plus | 97.751 | 100 | 0 | 1685 |
| replicon | CP030770_00142 | rep_cluster_2131 | 82605 | 83171 | plus | 95.414 | 100 | 0 | 904 |
| replicon | 000136__AP014877_00014 | IncFIA | 106794 | 107651 | minus | 96.62 | 100 | 0 | 1424 |
| replicon | CP003035 | IncFIC | 107649 | 107907 | plus | 99.614 | 100 | 3.77e-131 | 473 |
| relaxase | NC_017627_00068 | MOBF | 1 | 2556 | minus | 96.244 | 100 | 0 | 1647 |
| relaxase | NC_021819_00066 | MOBP | 75995 | 76333 | minus | 88.496 | 84 | 2.75e-58 | 208 |
| relaxase | MG904998_00124 | MOBF | 112732 | 115443 | minus | 97.898 | 100 | 0 | 1703 |
| mate-pair-formation | NC_019072_00073 | MPF_T | 2559 | 4700 | minus | 98.472 | 100 | 0 | 1439 |
| mate-pair-formation | NC_009837_00049 | MPF_F | 8195 | 11077 | minus | 93.25 | 98 | 0 | 1814 |
| mate-pair-formation | NC_009837_00049 | MPF_F | 11143 | 12363 | minus | 86.978 | 98 | 0 | 713 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 21 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |