Plasmid NZ_CP069454.1
Sequence
Nucleotide Information
| Accession | NZ_CP069454.1 |
|---|---|
| Description | Escherichia coli strain FDAARGOS_1254 plasmid unnamed1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 114230 bp |
| GC Content | 0.51 % |
| Created at NCBI | Feb. 16, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16357396 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,WA |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 47.29/-120.21 |
| Address | USA,WA |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | senB | copy | ||
| PGAG | ParB/RepB/Spo0J family partition protein | copy | ||
| PGAG | psiB | copy | ||
| PGAG | type I toxin-antitoxin system Hok family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | DUF932 domain-containing protein | copy | ||
| PGAG | transglycosylase SLT domain-containing protein | copy | ||
| PGAG | traM | copy | ||
| PGAG | PAS domain-containing protein | copy | ||
| PGAG | traY | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 131 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NC_010600 | MOBF | 5571 | 6020 | plus | 100 | 100 | 0 | 832 |
| replicon | 000136__AP014877_00014 | IncFIA | 43824 | 44681 | plus | 96.62 | 100 | 0 | 1424 |
| replicon | CP030770_00142 | rep_cluster_2131 | 68304 | 68870 | minus | 99.824 | 100 | 0 | 1042 |
| replicon | 000096__NC_019117_00097 | IncFIB | 87889 | 88866 | minus | 97.751 | 100 | 0 | 1685 |
| relaxase | NC_017627_00068 | MOBF | 33476 | 38743 | plus | 97.267 | 100 | 0 | 3348 |
| relaxase | NC_021819_00066 | MOBP | 75142 | 75480 | plus | 88.496 | 84 | 2.75e-58 | 208 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 8011 | 8319 | plus | 99.029 | 99 | 6.05e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 8897 | 9622 | plus | 98.76 | 100 | 4.19e-156 | 486 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 9625 | 11019 | plus | 95.494 | 96 | 0 | 808 |
| mate-pair-formation | NC_017630_00031 | MPF_F | 12181 | 12693 | plus | 100 | 100 | 3.3e-101 | 325 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |