Plasmid NZ_CP012634.1

Sequence

Nucleotide Information

Accession NZ_CP012634.1
Description Escherichia coli strain SF-166 plasmid pSF-166-1, complete sequence
Source refseq
Topology circular
Length 114221 bp
GC Content 0.51 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001280385.1
Assembly Coverage 90


Biosample

Curated Collection Information
Accession 4026226

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.755651N;122.404572W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.76/-122.40
Address San Francisco General Hospital, 1001, Potrero Avenue, Mission District, San Francisco, California, 94158, United States

ECOSYSTEM
Original Query Homo sapiens,patient blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP070042.1 See Comparison
NZ_CP069891.1 See Comparison
NZ_CP069454.1 See Comparison
NZ_CP069448.1 See Comparison
CP048858.1 See Comparison
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NZ_CP076124.1 See Comparison
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CP056570.1 See Comparison
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CP048858.1 See Comparison
NZ_CP047742.1 See Comparison
NZ_CP114307.1 See Comparison
NZ_CP116410.1 See Comparison
NZ_CP076124.1 See Comparison
NZ_CP095515.1 See Comparison
NZ_CP073622.1 See Comparison
NZ_CP014523.1 See Comparison
NZ_CP076688.1 See Comparison
NZ_CP014496.1 See Comparison
NC_017630.1 See Comparison
CP007150.1 See Comparison
NZ_CP028321.1 See Comparison
NC_013655.1 See Comparison
NC_013175.1 See Comparison
NC_007941.1 See Comparison
NZ_CP014110.1 See Comparison
NZ_LR130563.1 See Comparison
NZ_OZ040556.1 See Comparison
NZ_CP122455.1 See Comparison
NZ_CP122452.1 See Comparison
NZ_CP122449.1 See Comparison
NZ_CP082046.1 See Comparison
NZ_OZ038880.1 See Comparison
NZ_OZ040275.1 See Comparison
NZ_OZ040540.1 See Comparison
NZ_OZ039821.1 See Comparison
NZ_CP070125.1 See Comparison
CP056570.1 See Comparison
NZ_CP053246.1 See Comparison
NZ_CP051712.1 See Comparison
NZ_CP051736.1 See Comparison
NZ_CP051715.1 See Comparison
NZ_CP146662.1 See Comparison
NZ_AP029001.1 See Comparison
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NZ_CP047742.1 See Comparison
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NZ_CP069891.1 See Comparison
NZ_CP069454.1 See Comparison
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CP048858.1 See Comparison
CP007150.1 See Comparison
NZ_CP073622.1 See Comparison
NZ_CP076688.1 See Comparison
NZ_CP095515.1 See Comparison
NZ_CP076124.1 See Comparison
NZ_CP014523.1 See Comparison
NZ_CP014496.1 See Comparison
NC_013655.1 See Comparison
NC_017630.1 See Comparison
NC_013175.1 See Comparison
NZ_CP122455.1 See Comparison
NC_007941.1 See Comparison
NZ_LR130563.1 See Comparison
NZ_CP014110.1 See Comparison
NZ_CP028321.1 See Comparison
NZ_CP082046.1 See Comparison
NZ_CP122452.1 See Comparison
NZ_CP122449.1 See Comparison
NZ_OZ040556.1 See Comparison
NZ_OZ038880.1 See Comparison
NZ_OZ040275.1 See Comparison
NZ_OZ040540.1 See Comparison
NZ_OZ039821.1 See Comparison
NZ_CP146662.1 See Comparison
NZ_CP070125.1 See Comparison
CP056570.1 See Comparison
NZ_CP053246.1 See Comparison
NZ_CP051715.1 See Comparison
NZ_AP029001.1 See Comparison
NZ_CP051712.1 See Comparison
NZ_CP051736.1 See Comparison
NZ_CP070065.1 See Comparison
NZ_CP069448.1 See Comparison
NZ_CP070042.1 See Comparison
NZ_CP069891.1 See Comparison
NZ_CP069454.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore