Plasmid NZ_CP070958.1

Sequence

Nucleotide Information

Accession NZ_CP070958.1
Description Escherichia fergusonii strain EF44 plasmid pTB44P4, complete sequence
Source refseq
Topology circular
Length 46743 bp
GC Content 0.43 %
Created at NCBI Feb. 4, 2022



Assembly

Genome Data Information

Accession GCF_021730325.1
Assembly Coverage 170


Biosample

Curated Collection Information
Accession 18034686

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Fujian
Original Query Type name
Coordinates (Lat/Lon) 26.55/117.84
Address China,Fujian

ECOSYSTEM
Original Query chicken,mixed culture,feces
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP066320.1 See Comparison
NZ_CP099336.1 See Comparison
CP119490.1 See Comparison
NZ_CP086609.1 See Comparison
NZ_AP028821.1 See Comparison
CP082533.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
CP119490.1 See Comparison
CP066320.1 See Comparison
NZ_AP028821.1 See Comparison
NZ_CP086609.1 See Comparison
AP028813.1 See Comparison
NZ_CP099336.1 See Comparison
CP082533.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
NZ_CP123662.1 See Comparison
CP082568.1 See Comparison
CP119490.1 See Comparison
CP066320.1 See Comparison
NZ_CP099336.1 See Comparison
NZ_CP086609.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082718.1 See Comparison
CP082533.1 See Comparison
CP082564.1 See Comparison
CP082605.1 See Comparison
NZ_AP028821.1 See Comparison
NZ_CP123662.1 See Comparison
AP028813.1 See Comparison
CP066320.1 See Comparison
NZ_CP086609.1 See Comparison
CP119490.1 See Comparison
NZ_CP099336.1 See Comparison
NZ_CP070958.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082533.1 See Comparison
CP082718.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082605.1 See Comparison
CP119490.1 See Comparison
NZ_CP123662.1 See Comparison
NZ_AP028821.1 See Comparison
NZ_CP099336.1 See Comparison
AP028813.1 See Comparison
CP066320.1 See Comparison
CP082533.1 See Comparison
NZ_CP086609.1 See Comparison
CP082564.1 See Comparison
CP082718.1 See Comparison
CP082568.1 See Comparison
CP082605.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
NZ_CP123662.1 See Comparison
AP028813.1 See Comparison
NZ_AP028821.1 See Comparison
CP082718.1 See Comparison
NZ_CP099336.1 See Comparison
CP119490.1 See Comparison
CP066320.1 See Comparison
NZ_CP086609.1 See Comparison
CP082605.1 See Comparison
CP082533.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
NZ_AP028821.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore