Plasmid NZ_CP070955.1

Sequence

Nucleotide Information

Accession	NZ_CP070955.1
Description	Escherichia fergusonii strain EF44 plasmid pTB44P1, complete sequence
Source	refseq
Topology	circular
Length	143778 bp
GC Content	0.51 %
Created at NCBI	Feb. 4, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia fergusonii (564)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_fergusonii (564)
Strain

Assembly

Genome Data Information

Accession	GCF_021730325.1
Assembly Coverage	170

Biosample

Curated Collection Information

Accession	18034686

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Fujian
Original Query Type	name
Coordinates (Lat/Lon)	26.55/117.84
Address	China,Fujian

ECOSYSTEM

Original Query	chicken,mixed culture,feces
Classification	cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Gallus gallus (9031)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP070955.1	See Comparison

Plasmid Visualization

Grays

Blues

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Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	terZ		copy
amrfinderplus	terW		copy
amrfinderplus	tet(A)		copy
amrfinderplus	aadA5		copy
amrfinderplus	dfrA17		copy
rgi	dfrA17		copy
amrfinderplus	terD		copy
PGAG	transposase		copy
PGAG	tetR(A)		copy
PGAG	EamA family transporter		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 148 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	KM107848	MOBP	51695	51796	plus	100	100	4.9399999999999996e-46	189
replicon	000095__NZ_CP014273_00094	IncFIB	22604	23581	minus	98.569	100	0	1729
replicon	MG764547	IncI-gamma/K1	79244	80274	minus	100	99	0	1905
replicon	000340__KU353730	rep_cluster_1088	141484	142446	minus	100	100	0	1779
relaxase	NC_019097	MOBP	52141	54834	plus	94.766	99	0	1672
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 5 of 5 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2