Plasmid NZ_AP028821.1

Sequence

Nucleotide Information

Accession NZ_AP028821.1
Description Escherichia fergusonii strain 18B226LT plasmid p18B226LT6, complete sequence
Source refseq
Topology circular
Length 46120 bp
GC Content 0.43 %
Created at NCBI April 3, 2024



Assembly

Genome Data Information

Accession GCF_036509855.1
Assembly Coverage 79.8


Biosample

Curated Collection Information
Accession 36702053

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP070958.1 See Comparison
NZ_CP086609.1 See Comparison
CP082533.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082620.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
CP119490.1 See Comparison
CP066320.1 See Comparison
NZ_CP099336.1 See Comparison
CP119486.1 See Comparison
CP082533.1 See Comparison
NZ_CP070958.1 See Comparison
NZ_CP086609.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
CP082620.1 See Comparison
CP066320.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
NZ_CP099336.1 See Comparison
CP082533.1 See Comparison
CP119490.1 See Comparison
CP119486.1 See Comparison
NZ_CP070958.1 See Comparison
NZ_CP086609.1 See Comparison
CP082748.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082620.1 See Comparison
CP082657.1 See Comparison
NZ_CP123662.1 See Comparison
AP028813.1 See Comparison
CP066320.1 See Comparison
NZ_CP099336.1 See Comparison
NZ_CP070958.1 See Comparison
CP119490.1 See Comparison
CP119486.1 See Comparison
CP082533.1 See Comparison
NZ_CP086609.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082620.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
AP028813.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
NZ_CP099336.1 See Comparison
CP066320.1 See Comparison
NZ_CP123662.1 See Comparison
CP082533.1 See Comparison
CP119490.1 See Comparison
CP119486.1 See Comparison
NZ_CP070958.1 See Comparison
NZ_CP086609.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082620.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
NZ_CP123662.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
AP028813.1 See Comparison
NZ_CP099336.1 See Comparison
NZ_AP028821.1 See Comparison
CP066320.1 See Comparison
CP082533.1 See Comparison
CP119490.1 See Comparison
CP119486.1 See Comparison
NZ_CP070958.1 See Comparison
NZ_CP086609.1 See Comparison
CP082718.1 See Comparison
CP082605.1 See Comparison
CP082564.1 See Comparison
CP082568.1 See Comparison
CP082697.1 See Comparison
CP082620.1 See Comparison
CP082657.1 See Comparison
CP082748.1 See Comparison
CP066320.1 See Comparison
AP028813.1 See Comparison
NZ_CP123662.1 See Comparison
NZ_CP099336.1 See Comparison
CP119490.1 See Comparison
CP119486.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore