Plasmid CP066320.1
Sequence
Nucleotide Information
| Accession | CP066320.1 |
|---|---|
| Description | Salmonella enterica strain UWI_L96 isolate CFSAN103828 plasmid pUWI-L96.2, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 46120 bp |
| GC Content | 0.43 % |
| Created at NCBI | Dec. 17, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (28901) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16678581 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Trinidad and Tobago |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 10.87/-60.98 |
| Address | Trinidad and Tobago |
ECOSYSTEM
| Original Query | environmental,environment |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | tap | copy | ||
| PGAG | repA | copy | ||
| PGAG | Tar ligand binding domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | IS66 family transposase | copy | ||
| PGAG | ParA family protein | copy | ||
| PGAG | DNA partition complex ParG | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | molybdopterin-guanine dinucleotide biosynthesis protein MobC | copy | ||
| PGAG | nikA | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 33 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | KM107848 | MOBP | 13720 | 13821 | plus | 100 | 100 | 4.9399999999999996e-46 | 189 |
| replicon | 000218__CP001123 | IncX1 | 10618 | 10990 | minus | 100 | 100 | 0 | 689 |
| relaxase | NC_019097 | MOBP | 14165 | 16861 | plus | 94.772 | 100 | 0 | 1672 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |