Plasmid NZ_CP062893.1

Sequence

Nucleotide Information

Accession NZ_CP062893.1
Description Escherichia coli O100:H21 strain Res13-Lact-ER07-18 plasmid unnamed973, complete sequence
Source refseq
Topology circular
Length 99946 bp
GC Content 0.49 %
Created at NCBI Nov. 19, 2020



Assembly

Genome Data Information

Accession GCF_015571795.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 16304150

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,Quebec
Original Query Type name
Coordinates (Lat/Lon) 52.48/-71.83
Address Canada,Quebec

ECOSYSTEM
Original Query Sus scrofa domesticus,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP062893.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusiroNcopy
amrfinderplusiucAcopy
amrfinderplusiucBcopy
amrfinderplusisscopy
amrfinderplusiucCcopy
amrfinderplusiucDcopy
amrfinderplusiroCcopy
amrfinderplusiroEcopy
amrfinderplusiroDcopy
amrfinderplusiroBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 81 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000095__NZ_CP014273_00094IncFIB1978plus98.56910001729
repliconKF954760IncFII6643466724minus91.065993.49e-107394
relaxaseNC_021819_00066MOBP82628963plus81.6241001.2700000000000002e-125401
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
AB011548.2ColRNAI87.02100.026752805plusEnterobacterialesenterobacteriales
AB011549.2IncFII96.1799.237230072558plusEnterobacterialesenterobacteriales
AB011549.2IncFIB(AP001918)98.24100.02571626397plusEnterobacterialesenterobacteriales
AB576781.2IncFII(S)100.0100.0111401111662plusEnterobacterialesenterobacteriales
AB576781.2IncFII(pAR0022)85.2998.42111685112119plusEnterobacterialesenterobacteriales
AB605179.1IncFII(S)100.0100.0131573131834plusEnterobacterialesenterobacteriales
AB605179.1IncFIB(AP001918)98.39100.02053421215plusEnterobacterialesenterobacteriales
AB605179.1IncFII(pAR0022)85.2998.42131857132291plusEnterobacterialesenterobacteriales
AE006471.2IncFIB(S)100.0100.01701117653plusEnterobacterialesenterobacteriales
AE006471.2IncFII(S)100.0100.016651926plusEnterobacterialesenterobacteriales
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Showing 1 to 10 of 60,619 entries
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