Plasmid CP037999.1

Sequence

Nucleotide Information

Accession CP037999.1
Description Shigella sonnei strain FC1653 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 6015 bp
GC Content 0.49 %
Created at NCBI Feb. 15, 2019



Assembly

Genome Data Information

Accession GCF_002735385.1
Assembly Coverage 174


Biosample

Curated Collection Information

Accession 7811411

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9165N;79.1325E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP152300.1 See Comparison
CP037999.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP053756.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP053756.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP140625.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2