Plasmid NZ_KP970685.1

Sequence

Nucleotide Information

Accession NZ_KP970685.1
Description Shigella sonnei strain IDH01791 plasmid pSSE3, complete sequence
Source refseq
Topology circular
Length 6015 bp
GC Content 0.49 %
Created at NCBI May 18, 2020



Biosample

Curated Collection Information
Accession 14226602

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query India
Original Query Type name
Coordinates (Lat/Lon) 20.01/64.42
Address India

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP037999.1 See Comparison
NZ_CP152300.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
CP125024.1 See Comparison
NZ_CP053756.1 See Comparison
CP037999.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP125018.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP140625.1 See Comparison
CP037999.1 See Comparison
NZ_CP151317.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
CP037999.1 See Comparison
NZ_CP053756.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP053756.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP140625.1 See Comparison
CP125024.1 See Comparison
CP037999.1 See Comparison
CP125018.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_KP970685.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP053756.1 See Comparison
CP037999.1 See Comparison
CP125024.1 See Comparison
CP125018.1 See Comparison
NZ_CP152300.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
CP037999.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP053756.1 See Comparison
CP125018.1 See Comparison
NZ_CP152300.1 See Comparison
CP125024.1 See Comparison
NZ_CP110406.1 See Comparison
NZ_CP151317.1 See Comparison
NZ_CP151367.1 See Comparison
NZ_CP151387.1 See Comparison
NZ_CP140625.1 See Comparison
NZ_CP110400.1 See Comparison
NZ_CP053756.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2