Plasmid NZ_CP047308.1

Sequence

Nucleotide Information

Accession NZ_CP047308.1
Description Citrobacter freundii strain L75 plasmid pCf75, complete sequence
Source refseq
Topology circular
Length 146252 bp
GC Content 0.52 %
Created at NCBI Jan. 16, 2020



Assembly

Genome Data Information

Accession GCF_009857035.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 13282750

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.13N;113.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.13/113.28
Address Dongping Damalu Road, Datang, Yuexiu District, Guangzhou City, Guangdong Province, 510100, China

ECOSYSTEM
Original Query Homo sapiens,urine sample
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 80
Host-associated Sex female

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP087671.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP054399.1 See Comparison
NZ_CP054408.1 See Comparison
NZ_CP054402.1 See Comparison
NZ_CP054405.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2