Plasmid NZ_CP054405.1

Sequence

Nucleotide Information

Accession NZ_CP054405.1
Description Klebsiella pneumoniae strain KCJ3K293 plasmid pKC148K, complete sequence
Source refseq
Topology circular
Length 147761 bp
GC Content 0.52 %
Created at NCBI June 15, 2021



Assembly

Genome Data Information

Accession GCF_007421885.2
Assembly Coverage 211


Biosample

Curated Collection Information
Accession 12285730

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.6436N;82.3549W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.64/-82.35
Address Lake Alice Conservation Area, Corry Circle, Corry Village, Gainesville, Alachua County, Florida, 32612, United States

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmph(A)copy
amrfinderplusarr-3copy
amrfinderplussul2copy
amrfinderplussul1copy
amrfinderplussul1copy
amrfinderplusarr-3copy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusblaNDM-1copy
amrfinderplusaadA16copy
amrfinderplusaac(3)-IIdcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 202 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_009140_00071MPF_F7396875830plus99.83910001176
mate-pair-formationNC_014170_00023MPF_F8025281166plus92.1311000569
mate-pair-formationNC_012885_00083MPF_F8116682479plus90.4111000752
mate-pair-formationNC_016974_00085MPF_F8247983054plus99.4791005.59e-115365
mate-pair-formationNC_012885_00088MPF_T9003892482plus98.1610001640
mate-pair-formationNC_012885_00091MPF_F9330793657plus89.8311005.2500000000000006e-173217
mate-pair-formationNC_012885_00091MPF_F9365494310plus92.2371005.2500000000000006e-173417
mate-pair-formationNC_023291_00077MPF_F9523796241plus98.8061000581
mate-pair-formationNC_012885_00167MPF_F146316147746plus97.4841000931
oriTJQ319772MOBH85788975plus1001000736
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2