Plasmid NZ_CP019053.1

Sequence

Nucleotide Information

Accession NZ_CP019053.1
Description Escherichia coli strain CRE1540 plasmid p1540-2, complete sequence
Source refseq
Topology circular
Length 155802 bp
GC Content 0.53 %
Created at NCBI Jan. 11, 2018



Assembly

Genome Data Information

Accession GCF_002860085.1
Assembly Coverage 205


Biosample

Curated Collection Information
Accession 6198938

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.28N;114.14E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.28/114.14
Address Po Shan Road, Mid-Levels West, Sai Ying Pun, Central and Western District, Hong Kong Island, Hong Kong, China

ECOSYSTEM
Original Query Homo sapiens,Rectal Swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MH061195.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_MH061195.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_CP019053.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison
NZ_CP087671.1 See Comparison
NZ_OL348378.1 See Comparison
NZ_CP047308.1 See Comparison
NZ_CP104722.1 See Comparison
NZ_OQ338157.1 See Comparison
NZ_CP104926.1 See Comparison
NZ_CP104606.1 See Comparison
NZ_CP104923.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblecopy
rgitet(A)copy
rgimphAcopy
rgicatB3copy
rgitet(A)copy
rgiBRP(MBL)copy
rgiAAC(6')-Ib-cr6copy
amrfinderplusqacEdelta1copy
rgiMrxcopy
amrfinderplusqacEdelta1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 212 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_009140_00071MPF_F7186873730plus99.83910001176
mate-pair-formationNC_014170_00023MPF_F7815379067plus92.1311000569
mate-pair-formationNC_012885_00083MPF_F7906780380plus90.4111000752
mate-pair-formationNC_016974_00085MPF_F8038080955plus99.4791005.59e-115365
mate-pair-formationNC_012885_00088MPF_T8793990383plus98.1610001640
mate-pair-formationNC_012885_00091MPF_F9120892470plus93.6021000818
mate-pair-formationNC_023291_00077MPF_F9313894142plus98.8061000581
mate-pair-formationNC_012885_00167MPF_F144566145996plus97.4841000931
oriTJQ319772MOBH154589154986plus1001000736
relaxaseNC_012885_00072MOBH6889371865plus88.3189901595
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2