Plasmid NZ_CP046274.1

Sequence

Nucleotide Information

Accession NZ_CP046274.1
Description Enterobacter hormaechei strain E70 plasmid pE70-NDM1, complete sequence
Source refseq
Topology circular
Length 53773 bp
GC Content 0.49 %
Created at NCBI Dec. 9, 2019



Assembly

Genome Data Information

Accession GCF_009728975.1
Assembly Coverage 130


Biosample

Curated Collection Information

Accession 13335391

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 23.13N;113.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 23.13/113.28
Address Dongping Damalu Road, Datang, Yuexiu District, Guangzhou City, Guangdong Province, 510100, China

ECOSYSTEM
Original Query Homo sapiens,urine sample
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_ON209133.1 See Comparison
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NZ_CP050158.1 See Comparison
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NZ_MH909343.1 See Comparison
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NZ_MH909333.1 See Comparison
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NZ_CP114575.1 See Comparison
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NZ_ON209132.1 See Comparison
NZ_ON209150.1 See Comparison
NZ_ON209123.1 See Comparison
NZ_ON209133.1 See Comparison
NZ_ON209142.1 See Comparison
NZ_ON209124.1 See Comparison
NZ_ON209139.1 See Comparison
NZ_ON209126.1 See Comparison
NZ_ON209137.1 See Comparison
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NZ_CP103366.1 See Comparison
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NZ_CP088226.1 See Comparison
NZ_CP053646.1 See Comparison
NZ_CP088232.1 See Comparison
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NZ_CP101550.1 See Comparison
NZ_CP053694.1 See Comparison
NZ_CP092495.1 See Comparison
NZ_CP091980.1 See Comparison
NZ_CP090129.1 See Comparison
NZ_CP084105.1 See Comparison
NZ_MZ156801.1 See Comparison
NZ_CP082900.1 See Comparison
NZ_CP080473.1 See Comparison
NZ_CP076461.1 See Comparison
NZ_CP137129.1 See Comparison
NC_020811.1 See Comparison
NC_019162.1 See Comparison
NZ_CP028786.2 See Comparison
NZ_CP029386.1 See Comparison
NZ_CP137176.1 See Comparison
NZ_CP137186.1 See Comparison
NZ_CP137167.1 See Comparison
NZ_CP030299.1 See Comparison
NC_025130.1 See Comparison
NC_023914.1 See Comparison
NZ_CP037965.1 See Comparison
CP034323.1 See Comparison
NZ_CP138836.1 See Comparison
NZ_CP137124.1 See Comparison
NZ_CP133344.1 See Comparison
NZ_OQ338158.1 See Comparison
NZ_CP151755.1 See Comparison
NZ_CP152423.1 See Comparison
NZ_CP155123.1 See Comparison
NZ_CP154591.1 See Comparison
NZ_CP151761.1 See Comparison
NZ_CP151758.1 See Comparison
NZ_CP127522.1 See Comparison
NZ_CP149944.1 See Comparison
NZ_CP149133.1 See Comparison
NZ_CP139934.1 See Comparison
NZ_CP136604.1 See Comparison
NZ_CP050161.1 See Comparison
NZ_CP139395.1 See Comparison
NZ_CP139381.1 See Comparison
NZ_CP050158.1 See Comparison
NZ_MK372386.1 See Comparison
NZ_CP058664.1 See Comparison
NZ_MK372381.1 See Comparison
NZ_MK372382.1 See Comparison
NZ_MK372380.1 See Comparison
NZ_MK372383.1 See Comparison
NZ_MK372387.1 See Comparison
NZ_MH234505.1 See Comparison
NZ_CP055250.1 See Comparison
NZ_MH349095.1 See Comparison
NZ_MG252893.1 See Comparison
NZ_MH909342.1 See Comparison
NZ_MH917282.1 See Comparison
NZ_MF344560.1 See Comparison
NZ_MH909347.1 See Comparison
NZ_MH909343.1 See Comparison
NZ_MH917283.1 See Comparison
NZ_MH909335.1 See Comparison
NZ_MH909346.1 See Comparison
NZ_MH909333.1 See Comparison
NZ_MF344558.1 See Comparison
NZ_CP039811.1 See Comparison
NZ_KX470734.1 See Comparison
NZ_KX094555.1 See Comparison
NZ_KU314941.1 See Comparison
NZ_MF072961.1 See Comparison
NZ_KY978629.1 See Comparison
NZ_KY296103.1 See Comparison
NZ_KP987216.1 See Comparison
NZ_KR059865.1 See Comparison
NZ_KY913899.1 See Comparison
NZ_CP026015.1 See Comparison
NZ_MW269623.1 See Comparison
NZ_MN178638.1 See Comparison
CP046892.1 See Comparison
NZ_MN061454.1 See Comparison
NZ_MN937240.1 See Comparison
NZ_ON209132.1 See Comparison
NZ_CP116218.1 See Comparison
NZ_CP114575.1 See Comparison
NZ_ON209150.1 See Comparison
NZ_ON209123.1 See Comparison
NZ_ON209133.1 See Comparison
NZ_CP104795.1 See Comparison
NZ_ON209124.1 See Comparison
NZ_ON209139.1 See Comparison
NZ_ON209125.1 See Comparison
NZ_ON209142.1 See Comparison
NZ_ON209126.1 See Comparison
NZ_CP053694.1 See Comparison
NZ_ON209137.1 See Comparison
NZ_ON209134.1 See Comparison
NZ_CP103366.1 See Comparison
NZ_CP103970.1 See Comparison
NZ_CP101780.1 See Comparison
NZ_CP101550.1 See Comparison
NZ_CP043582.1 See Comparison
NZ_CP053646.1 See Comparison
NZ_CP088232.1 See Comparison
NZ_CP088226.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore