Plasmid NZ_CP092495.1

Sequence

Nucleotide Information

Accession	NZ_CP092495.1
Description	Citrobacter freundii strain SCLZS47 plasmid pNDM1_SCLZS47, complete sequence
Source	refseq
Topology	circular
Length	56984 bp
GC Content	0.50 %
Created at NCBI	March 3, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter freundii (546)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_freundii (546)
Strain

Assembly

Genome Data Information

Accession	GCF_022430505.1
Assembly Coverage	200

Biosample

Curated Collection Information

Accession	26087385

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	28.89N;105.42E
Original Query Type	coordinates
Coordinates (Lat/Lon)	28.89/105.42
Address	香林路南, 香林路三段, Shuanggui, Hongxing, Longmatan, Longmatan District, Luzhou, Sichuan, 646000, China

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP034323.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_CP138836.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_CP050158.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP101780.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_CP103366.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP090129.1	See Comparison
NC_025130.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP076461.1	See Comparison
CP034323.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_CP138836.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP050158.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP101780.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_CP103366.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP090129.1	See Comparison
NZ_CP138836.1	See Comparison
NZ_CP076461.1	See Comparison
NC_025130.1	See Comparison
CP034323.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_CP050158.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_CP092495.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP103366.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP101780.1	See Comparison
CP034323.1	See Comparison
NZ_CP090129.1	See Comparison
NZ_CP076461.1	See Comparison
NC_025130.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP138836.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP050158.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP103366.1	See Comparison
NZ_CP090129.1	See Comparison
NZ_CP101780.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP050158.1	See Comparison
NC_025130.1	See Comparison
NZ_CP138836.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP076461.1	See Comparison
CP034323.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_CP101780.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP103366.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP076461.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP090129.1	See Comparison
NZ_CP138836.1	See Comparison
NC_025130.1	See Comparison
NZ_CP029386.1	See Comparison
NZ_CP137167.1	See Comparison
NZ_CP137129.1	See Comparison
NZ_CP101780.1	See Comparison
NZ_CP151755.1	See Comparison
NZ_CP151761.1	See Comparison
NZ_CP151758.1	See Comparison
NZ_CP149944.1	See Comparison
NZ_CP127522.1	See Comparison
NZ_CP136604.1	See Comparison
NZ_CP050158.1	See Comparison
NZ_CP058664.1	See Comparison
NZ_CP055250.1	See Comparison
NZ_MK372382.1	See Comparison
NZ_MK372383.1	See Comparison
NZ_MG252893.1	See Comparison
NZ_CP039811.1	See Comparison
NZ_MN178638.1	See Comparison
NZ_CP114575.1	See Comparison
NZ_CP103366.1	See Comparison
CP034323.1	See Comparison
NZ_MH234505.1	See Comparison
NZ_CP046274.1	See Comparison
NZ_MN061454.1	See Comparison
NZ_ON209150.1	See Comparison
NZ_ON209142.1	See Comparison
NZ_ON209139.1	See Comparison
NZ_CP053694.1	See Comparison
NZ_CP080473.1	See Comparison
NZ_CP088226.1	See Comparison
NZ_CP053646.1	See Comparison
NZ_CP076461.1	See Comparison
NC_025130.1	See Comparison
NZ_CP090129.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore