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v. 2024_05_31_v2
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Typing
Plasmid NZ_MH909342.1
Sequence
Nucleotide Information
Accession
NZ_MH909342.1
Description
Klebsiella pneumoniae strain 12-SP plasmid p12SP-NDM, complete sequence
Source
refseq
Topology
linear
Length
54035 bp
GC Content
0.49 %
Created at NCBI
June 3, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Biosample
Curated Collection Information
Accession
14228014
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China
Original Query Type
name
Coordinates (Lat/Lon)
34.41/86.03
Address
China
ECOSYSTEM
Original Query
Shanxi
Classification
location
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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NZ_CP114575.1
See Comparison
NZ_CP116218.1
See Comparison
NZ_CP104795.1
See Comparison
NZ_ON209132.1
See Comparison
NZ_ON209150.1
See Comparison
NZ_ON209123.1
See Comparison
NZ_ON209125.1
See Comparison
NZ_ON209133.1
See Comparison
NZ_ON209142.1
See Comparison
NZ_ON209124.1
See Comparison
NZ_ON209139.1
See Comparison
NZ_ON209126.1
See Comparison
NZ_ON209137.1
See Comparison
NZ_CP103970.1
See Comparison
NZ_ON209134.1
See Comparison
NZ_CP053694.1
See Comparison
NZ_CP101550.1
See Comparison
NZ_CP103366.1
See Comparison
NZ_CP101780.1
See Comparison
NZ_CP088226.1
See Comparison
NZ_CP053646.1
See Comparison
NZ_CP088232.1
See Comparison
NZ_CP082900.1
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NZ_CP091980.1
See Comparison
NZ_CP084105.1
See Comparison
NZ_CP043582.1
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NZ_CP090129.1
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NZ_CP080473.1
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NC_020811.1
See Comparison
NZ_MZ156801.1
See Comparison
NZ_CP076461.1
See Comparison
NZ_CP030299.1
See Comparison
NC_025130.1
See Comparison
NC_023914.1
See Comparison
NC_019162.1
See Comparison
NZ_CP137186.1
See Comparison
NZ_CP028786.2
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NZ_CP037965.1
See Comparison
CP034323.1
See Comparison
NZ_CP029386.1
See Comparison
NZ_CP138836.1
See Comparison
NZ_CP137167.1
See Comparison
NZ_OQ338158.1
See Comparison
NZ_CP137176.1
See Comparison
NZ_CP137129.1
See Comparison
NZ_CP137124.1
See Comparison
NZ_CP133344.1
See Comparison
NZ_CP136604.1
See Comparison
NZ_CP155123.1
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NZ_CP154591.1
See Comparison
NZ_CP152423.1
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NZ_CP151755.1
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NZ_CP151761.1
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NZ_CP151758.1
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NZ_CP149133.1
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NZ_CP149944.1
See Comparison
NZ_CP127522.1
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NZ_CP139934.1
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NZ_CP139395.1
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NZ_CP139381.1
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NZ_CP050158.1
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NZ_CP050161.1
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NZ_CP058664.1
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Identical Plasmids
100% Sequence Identity
NZ_KR059865.1
Sequence
Accession
:
NZ_KR059865.1
Description
: Enterobacter cloacae strain EC-YQ13500 plasmid pYQ13500-NDM, complete sequence
Source
: refseq
Created at NCBI
: June 3, 2020
Host Taxonomy
Assigned Host
:
Enterobacter cloacae (550)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_cloacae (550)
Strain
:
Biosample
Accession
:
14226645
GEOGRAPHICAL INFORMATION
Original Query
: China
Original Query Type
: name
Address
: China
Coordinates
(Lat/Lon): 34.41/86.03
ECOSYSTEM
Original Query
: blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Visualization
PNG
JSON
NC_023914.1
Sequence
Accession
:
NC_023914.1
Description
: Enterobacter cloacae plasmid pNDM-HF727, complete sequence
Source
: refseq
Created at NCBI
: April 9, 2014
Host Taxonomy
Assigned Host
:
Enterobacter cloacae (550)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_cloacae (550)
Strain
:
Biosample
Accession
:
14226761
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_ON209124.1
Sequence
Accession
:
NZ_ON209124.1
Description
: Enterobacter hormaechei subsp. xiangfangensis strain HD2543 plasmid pHD2543-NDM, complete sequence
Source
: refseq
Created at NCBI
: Dec. 5, 2022
Host Taxonomy
Assigned Host
:
Enterobacter hormaechei (1296536)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_hormaechei (158836)
Strain
:
NZ_ON209126.1
Sequence
Accession
:
NZ_ON209126.1
Description
: Enterobacter hormaechei subsp. xiangfangensis strain HD7431 plasmid pHD7431-NDM, complete sequence
Source
: refseq
Created at NCBI
: Dec. 5, 2022
Host Taxonomy
Assigned Host
:
Enterobacter hormaechei (1296536)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_hormaechei (158836)
Strain
:
NZ_ON209134.1
Sequence
Accession
:
NZ_ON209134.1
Description
: Enterobacter hormaechei subsp. xiangfangensis strain HD8719 plasmid pHD8719-NDM, complete sequence
Source
: refseq
Created at NCBI
: Dec. 5, 2022
Host Taxonomy
Assigned Host
:
Enterobacter hormaechei (1296536)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Enterobacter (547)
Species
:
Enterobacter_hormaechei (158836)
Strain
:
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore