Plasmid NZ_CP045256.1

Sequence

Nucleotide Information

Accession NZ_CP045256.1
Description Proteus mirabilis strain L90-1 plasmid pL901, complete sequence
Source refseq
Topology circular
Length 24983 bp
GC Content 0.54 %
Created at NCBI June 16, 2020



Assembly

Genome Data Information

Accession GCF_013343255.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 13037561

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.3N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.30/120.20
Address 杭州濮家小学教育集团(笕新校区), 全福桥路, 池塘庙, Jianqiao, Shangcheng District, Hangzhou City, Zhejiang, 310017, China

ECOSYSTEM
Original Query Homosapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Aspiration pneumonia, respiratory failure, cerebral infarction,Zhejiang
DOID/SYMP
  • Respiratory failure (DOID:11162 )
    • A lung disease characterized by inadequate gas exchange by the respiratory system.
  • Aspiration pneumonia (DOID:0050152 )
    • A bacterial pneumonia which is an acute pulmonary inflammatory response that develops after the inhalation of colonized oropharyngeal material containing bacteria. It is seen in individuals with dysphagia and gastric dysmotility. The disease has_symptom tachypnea and has_symptom cough.
  • Cerebrovascular disease (DOID:6713 )
    • An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP031847.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2