Plasmid NZ_CP137225.1

Sequence

Nucleotide Information

Accession NZ_CP137225.1
Description Proteus mirabilis strain PM38 plasmid pPM38-KPC_25k, complete sequence
Source refseq
Topology circular
Length 25002 bp
GC Content 0.54 %
Created at NCBI Nov. 2, 2023



Assembly

Genome Data Information

Accession GCF_033170485.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 37935302

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 29.86N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 29.86/121.56
Address Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pulmonary infection
DOID/SYMP
  • Lung disease (DOID:850 )
    • A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098452.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-2copy
PGAGreplication initiation proteincopy
PGAGrecombinase family proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGIS481-like element ISKpn27 family transposasecopy
PGAGcarbapenem-hydrolyzing class A beta-lactamase KPC-2copy
PGAGtranscriptional regulatorcopy
PGAGhypothetical proteincopy
PGAGantirestriction proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 29 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNZ_CP016035MOBF1386714134minus87.5461004.2000000000000003e-81307
replicon000153__NC_019087_00001IncN1720plus99.58310001314
replicon000210__KF623109_00045IncU89659525minus10010001037
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2