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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP045255.1
Sequence
Nucleotide Information
Accession
NZ_CP045255.1
Description
Proteus mirabilis strain L90-1 plasmid pL902, complete sequence
Source
refseq
Topology
circular
Length
36067 bp
GC Content
0.62 %
Created at NCBI
June 16, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Proteus mirabilis (584)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Morganellaceae (1903414)
Genus
Proteus (583)
Species
Proteus_mirabilis (584)
Strain
Assembly
Genome Data Information
Accession
GCF_013343255.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
13037561
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
30.3N;120.2E
Original Query Type
coordinates
Coordinates (Lat/Lon)
30.30/120.20
Address
杭州濮家小学教育集团(笕新校区), 全福桥路, 池塘庙, Jianqiao, Shangcheng District, Hangzhou City, Zhejiang, 310017, China
ECOSYSTEM
Original Query
Homosapiens,stool
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Aspiration pneumonia, respiratory failure, cerebral infarction,Zhejiang
DOID/SYMP
Respiratory failure
(
DOID:11162
)
A lung disease characterized by inadequate gas exchange by the respiratory system.
Aspiration pneumonia
(
DOID:0050152
)
A bacterial pneumonia which is an acute pulmonary inflammatory response that develops after the inhalation of colonized oropharyngeal material containing bacteria. It is seen in individuals with dysphagia and gastric dysmotility. The disease has_symptom tachypnea and has_symptom cough.
Cerebrovascular disease
(
DOID:6713
)
An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.
Visualization
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Plasmids from same Biosample
NZ_CP045256.1
Similar Plasmids
based on Mash distance
NZ_CP045255.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore