Plasmid NZ_CP045255.1

Sequence

Nucleotide Information

Accession NZ_CP045255.1
Description Proteus mirabilis strain L90-1 plasmid pL902, complete sequence
Source refseq
Topology circular
Length 36067 bp
GC Content 0.62 %
Created at NCBI June 16, 2020



Assembly

Genome Data Information

Accession GCF_013343255.1
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 13037561

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.3N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.30/120.20
Address 杭州濮家小学教育集团(笕新校区), 全福桥路, 池塘庙, Jianqiao, Shangcheng District, Hangzhou City, Zhejiang, 310017, China

ECOSYSTEM
Original Query Homosapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Aspiration pneumonia, respiratory failure, cerebral infarction,Zhejiang
DOID/SYMP
  • Respiratory failure (DOID:11162 )
  • A lung disease characterized by inadequate gas exchange by the respiratory system.
  • Aspiration pneumonia (DOID:0050152 )
  • A bacterial pneumonia which is an acute pulmonary inflammatory response that develops after the inhalation of colonized oropharyngeal material containing bacteria. It is seen in individuals with dysphagia and gastric dysmotility. The disease has_symptom tachypnea and has_symptom cough.
  • Cerebrovascular disease (DOID:6713 )
  • An vascular disease that is characterized by dysfunction of the blood vessels supplying the brain.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore