Plasmid NZ_CP031847.1

Sequence

Nucleotide Information

Accession NZ_CP031847.1
Description Proteus mirabilis strain XH983 plasmid pXH983, complete sequence
Source refseq
Topology circular
Length 24225 bp
GC Content 0.54 %
Created at NCBI Sept. 21, 2022



Assembly

Genome Data Information

Accession GCF_025264285.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 9908145

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.26N;120.19E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.19
Address Qingchun Road (East), 采荷, Caihe, Shangcheng District, Hangzhou City, Zhejiang, 310016, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query septicemia
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP045256.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2