Plasmid NZ_CP031847.1

Sequence

Nucleotide Information

Accession NZ_CP031847.1
Description Proteus mirabilis strain XH983 plasmid pXH983, complete sequence
Source refseq
Topology circular
Length 24225 bp
GC Content 0.54 %
Created at NCBI Sept. 21, 2022



Assembly

Genome Data Information

Accession GCF_025264285.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 9908145

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.26N;120.19E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.19
Address Qingchun Road (East), 采荷, Caihe, Shangcheng District, Hangzhou City, Zhejiang, 310016, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query septicemia
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP017083.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP031847.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP136434.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP098449.1 See Comparison
NZ_CP098452.1 See Comparison
NZ_CP137082.1 See Comparison
NZ_CP017083.1 See Comparison
NZ_CP138493.1 See Comparison
NZ_CP137334.1 See Comparison
NZ_CP137222.1 See Comparison
NZ_CP137227.1 See Comparison
NZ_CP137225.1 See Comparison
NZ_CP045256.1 See Comparison
NZ_CP136434.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-2copy
PGAGhypothetical proteincopy
PGAGantirestriction protein ArdAcopy
PGAGccgAIcopy
PGAGccgAIIcopy
PGAGhypothetical proteincopy
PGAGstbCcopy
PGAGstbBcopy
PGAGstbAcopy
PGAGTn3-like element TnAs1 family transposasecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 29 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNZ_CP016035MOBF52355502plus87.5461004.2000000000000003e-81307
replicon000210__KF623109_00045IncU984410404plus10010001037
replicon000153__NC_019087_00001IncN1864919368minus99.58310001314
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2