Plasmid NZ_CP039274.1

Sequence

Nucleotide Information

Accession	NZ_CP039274.1
Description	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence
Source	refseq
Topology	circular
Length	4096 bp
GC Content	0.56 %
Created at NCBI	April 19, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 (1399047)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain	Salmonella_enterica_subsp._enterica_serovar_Senftenberg_str._CFSAN004025 (1399047)

Assembly

Genome Data Information

Accession	GCF_004798785.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	2352702

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Mexico
Original Query Type	name
Coordinates (Lat/Lon)	19.43/-99.13
Address	Mexico

ECOSYSTEM

Original Query	Animal feed,fish meal
Classification	food,host_associated
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP028857.1	See Comparison
NZ_CP056696.1	See Comparison
NZ_CP099321.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
OW969707.1	See Comparison
OW968022.1	See Comparison
OW849329.1	See Comparison
OW849311.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
NZ_CP016528.1	See Comparison
CP073308.1	See Comparison
NZ_CP044113.1	See Comparison
NZ_AP019693.1	See Comparison
NZ_CP033827.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP030227.1	See Comparison
NZ_CP030009.1	See Comparison
NZ_CP029125.1	See Comparison
CP123779.1	See Comparison
CP056179.1	See Comparison
NZ_CP058179.1	See Comparison
NZ_CP147671.1	See Comparison
CP065861.1	See Comparison
NZ_CP070532.1	See Comparison
NZ_CP065844.1	See Comparison
NZ_CP028857.1	See Comparison
OW969707.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
NZ_CP056696.1	See Comparison
NZ_CP099321.1	See Comparison
OW849329.1	See Comparison
OW968022.1	See Comparison
OW849311.1	See Comparison
NZ_CP033827.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
NZ_AP019693.1	See Comparison
CP073308.1	See Comparison
NZ_CP016528.1	See Comparison
NZ_CP044113.1	See Comparison
NZ_CP030009.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP030227.1	See Comparison
CP123779.1	See Comparison
NZ_CP029125.1	See Comparison
NZ_CP058179.1	See Comparison
NZ_CP147671.1	See Comparison
CP056179.1	See Comparison
NZ_CP099321.1	See Comparison
NZ_CP070532.1	See Comparison
CP065861.1	See Comparison
NZ_CP065844.1	See Comparison
NZ_CP028857.1	See Comparison
OW968022.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
OW969707.1	See Comparison
NZ_CP056696.1	See Comparison
CP073308.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
OW849329.1	See Comparison
OW849311.1	See Comparison
NZ_AP019693.1	See Comparison
NZ_CP016528.1	See Comparison
NZ_CP044113.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP033827.1	See Comparison
NZ_CP030009.1	See Comparison
NZ_CP030227.1	See Comparison
CP123779.1	See Comparison
NZ_CP029125.1	See Comparison
NZ_CP058179.1	See Comparison
NZ_CP147671.1	See Comparison
CP056179.1	See Comparison
NZ_CP070532.1	See Comparison
CP065861.1	See Comparison
NZ_CP065844.1	See Comparison
NZ_CP099321.1	See Comparison
NZ_CP028857.1	See Comparison
OW969707.1	See Comparison
NZ_CP056696.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
OW968022.1	See Comparison
NZ_CP044113.1	See Comparison
OW849329.1	See Comparison
OW849311.1	See Comparison
NZ_CP016528.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
CP073308.1	See Comparison
NZ_CP030009.1	See Comparison
NZ_AP019693.1	See Comparison
NZ_CP033827.1	See Comparison
NZ_CP028857.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP030227.1	See Comparison
NZ_CP058179.1	See Comparison
CP065861.1	See Comparison
NZ_CP065844.1	See Comparison
NZ_CP029125.1	See Comparison
CP123779.1	See Comparison
NZ_CP147671.1	See Comparison
CP056179.1	See Comparison
NZ_CP070532.1	See Comparison
NZ_CP099321.1	See Comparison
OW969707.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
NZ_CP056696.1	See Comparison
OW849329.1	See Comparison
OW968022.1	See Comparison
OW849311.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
NZ_AP019693.1	See Comparison
CP073308.1	See Comparison
NZ_CP016528.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP044113.1	See Comparison
NZ_CP033827.1	See Comparison
NZ_CP030009.1	See Comparison
NZ_CP030227.1	See Comparison
NZ_CP147671.1	See Comparison
NZ_CP029125.1	See Comparison
CP123779.1	See Comparison
NZ_CP070532.1	See Comparison
NZ_CP058179.1	See Comparison
CP056179.1	See Comparison
NZ_CP056696.1	See Comparison
CP065861.1	See Comparison
NZ_CP065844.1	See Comparison
NZ_CP028857.1	See Comparison
NZ_CP099321.1	See Comparison
NZ_CP103686.1	See Comparison
NZ_CP103682.1	See Comparison
OW969707.1	See Comparison
NZ_AP019693.1	See Comparison
OW849329.1	See Comparison
OW849311.1	See Comparison
OW968022.1	See Comparison
AP024920.1	See Comparison
AP024915.1	See Comparison
CP073308.1	See Comparison
NZ_CP016528.1	See Comparison
NZ_CP033827.1	See Comparison
NZ_CP044113.1	See Comparison
NZ_CP039274.1	See Comparison
NZ_CP058179.1	See Comparison
NZ_CP030192.1	See Comparison
NZ_CP030227.1	See Comparison
NZ_CP030009.1	See Comparison
CP123779.1	See Comparison
NZ_CP147671.1	See Comparison
NZ_CP029125.1	See Comparison
CP056179.1	See Comparison
CP065861.1	See Comparison
NZ_CP070532.1	See Comparison
NZ_CP065844.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore