Plasmid CP073308.1

Sequence

Nucleotide Information

Accession CP073308.1
Description Klebsiella michiganensis strain CZ598 plasmid pCZ598_Col, complete sequence
Source insd
Topology circular
Length 4096 bp
GC Content 0.56 %
Created at NCBI April 27, 2021



Biosample

Curated Collection Information
Accession 18753391

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 49.73N;13.37E
Original Query Type coordinates
Coordinates (Lat/Lon) 49.73/13.37
Address Klatovská třída, Bory, Plzeň, Plzeň 3, Pilsen, okres Plzeň-město, Plzeňský kraj, Southwest, 301 00, Czechia

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query kidney failure
DOID/SYMP
  • Kidney failure (DOID:1074 )
    • A kidney disease characterized by the failure of the kidneys to adequately filter waste products from the blood.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP070532.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP028857.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP099321.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
OW969707.1 See Comparison
OW968022.1 See Comparison
AP024920.1 See Comparison
OW849329.1 See Comparison
OW849311.1 See Comparison
AP024915.1 See Comparison
NZ_AP019693.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP016528.1 See Comparison
NZ_CP058179.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP030227.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP029125.1 See Comparison
CP123779.1 See Comparison
NZ_CP147671.1 See Comparison
NZ_CP056696.1 See Comparison
CP056179.1 See Comparison
NZ_CP070532.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP028857.1 See Comparison
NZ_CP099321.1 See Comparison
AP024920.1 See Comparison
OW849329.1 See Comparison
OW849311.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
OW969707.1 See Comparison
OW968022.1 See Comparison
AP024915.1 See Comparison
NZ_CP033827.1 See Comparison
CP073308.1 See Comparison
NZ_CP016528.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_AP019693.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP030227.1 See Comparison
CP123779.1 See Comparison
NZ_CP029125.1 See Comparison
NZ_CP058179.1 See Comparison
NZ_CP147671.1 See Comparison
CP056179.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP070532.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP099321.1 See Comparison
NZ_CP028857.1 See Comparison
AP024920.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
OW968022.1 See Comparison
OW969707.1 See Comparison
OW849329.1 See Comparison
OW849311.1 See Comparison
AP024915.1 See Comparison
NZ_CP029125.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP016528.1 See Comparison
NZ_AP019693.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP030227.1 See Comparison
CP123779.1 See Comparison
CP065861.1 See Comparison
NZ_CP058179.1 See Comparison
NZ_CP147671.1 See Comparison
CP056179.1 See Comparison
NZ_CP070532.1 See Comparison
NZ_CP065844.1 See Comparison
OW969707.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP099321.1 See Comparison
NZ_CP028857.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
OW849329.1 See Comparison
OW968022.1 See Comparison
OW849311.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP016528.1 See Comparison
AP024920.1 See Comparison
AP024915.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_AP019693.1 See Comparison
CP123779.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP030227.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP029125.1 See Comparison
NZ_CP147671.1 See Comparison
NZ_CP070532.1 See Comparison
CP056179.1 See Comparison
NZ_CP058179.1 See Comparison
AP024920.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP099321.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
OW968022.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP028857.1 See Comparison
OW969707.1 See Comparison
OW849329.1 See Comparison
OW849311.1 See Comparison
AP024915.1 See Comparison
NZ_CP016528.1 See Comparison
NZ_AP019693.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP029125.1 See Comparison
NZ_CP030227.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP147671.1 See Comparison
CP123779.1 See Comparison
NZ_CP070532.1 See Comparison
CP056179.1 See Comparison
NZ_CP058179.1 See Comparison
OW969707.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP028857.1 See Comparison
NZ_CP103686.1 See Comparison
NZ_CP103682.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP099321.1 See Comparison
OW849329.1 See Comparison
OW968022.1 See Comparison
OW849311.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP039274.1 See Comparison
AP024920.1 See Comparison
AP024915.1 See Comparison
NZ_CP016528.1 See Comparison
NZ_AP019693.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP030227.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP147671.1 See Comparison
NZ_CP029125.1 See Comparison
CP123779.1 See Comparison
NZ_CP070532.1 See Comparison
CP056179.1 See Comparison
NZ_CP058179.1 See Comparison
OW849329.1 See Comparison
NZ_CP056696.1 See Comparison
NZ_CP099321.1 See Comparison
NZ_CP103682.1 See Comparison
OW968022.1 See Comparison
CP065861.1 See Comparison
NZ_CP065844.1 See Comparison
NZ_CP028857.1 See Comparison
NZ_CP103686.1 See Comparison
OW969707.1 See Comparison
OW849311.1 See Comparison
NZ_AP019693.1 See Comparison
AP024920.1 See Comparison
AP024915.1 See Comparison
NZ_CP044113.1 See Comparison
NZ_CP016528.1 See Comparison
CP123779.1 See Comparison
NZ_CP033827.1 See Comparison
NZ_CP030192.1 See Comparison
NZ_CP030227.1 See Comparison
NZ_CP030009.1 See Comparison
NZ_CP039274.1 See Comparison
NZ_CP029125.1 See Comparison
CP056179.1 See Comparison
NZ_CP147671.1 See Comparison
NZ_CP058179.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2