Plasmid NZ_CP038306.1

Sequence

Nucleotide Information

Accession NZ_CP038306.1
Description Escherichia coli O157:H7 strain SS NE 1040-1 plasmid pNE1040-2, complete sequence
Source refseq
Topology circular
Length 6042 bp
GC Content 0.46 %
Created at NCBI May 28, 2020



Assembly

Genome Data Information

Accession GCF_013167315.1
Assembly Coverage 228


Biosample

Curated Collection Information
Accession 5360230

PLASMID INFORMATION
BIOSAMPLE_pathotype EHEC

GEOGRAPHICAL INFORMATION
Original Query USA,Nebraska
Original Query Type name
Coordinates (Lat/Lon) 41.74/-99.59
Address USA,Nebraska

ECOSYSTEM
Original Query cattle,cattle feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP038310.1 See Comparison
CP051822.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028633.1 See Comparison
CP051822.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028615.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP028636.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028615.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
CP051822.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP038310.1 See Comparison
CP051822.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028615.1 See Comparison
NZ_CP040109.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
CP051822.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028615.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028615.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
CP051822.1 See Comparison
CP051817.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
CP051838.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP117664.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028657.1 See Comparison
NZ_CP028618.1 See Comparison
NZ_CP028630.1 See Comparison
NZ_CP028669.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028627.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028624.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028660.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028615.1 See Comparison
NZ_CP040109.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore