Plasmid NZ_CP028672.1

Sequence

Nucleotide Information

Accession	NZ_CP028672.1
Description	Escherichia coli strain 116 plasmid pTA116-2, complete sequence
Source	refseq
Topology	circular
Length	6078 bp
GC Content	0.46 %
Created at NCBI	May 8, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_005221865.1
Assembly Coverage	339

Biosample

Curated Collection Information

Accession	8773028

PLASMID INFORMATION

BIOSAMPLE_pathotype	Escherichia coli - STEC

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	cattle
Classification	host_associated
Host-associated Taxon	Bos taurus (9913)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_CP028673.1

Similar Plasmids

based on Mash distance

NZ_CP028678.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028615.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP117664.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051822.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028678.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028672.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028615.1	See Comparison
CP051822.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP117664.1	See Comparison
NZ_CP028678.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028615.1	See Comparison
NZ_CP117664.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051822.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP028678.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028615.1	See Comparison
CP051822.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP117664.1	See Comparison
NZ_CP028678.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028615.1	See Comparison
NZ_CP028681.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051822.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP117664.1	See Comparison
NZ_CP028657.1	See Comparison
NZ_CP028618.1	See Comparison
NZ_CP028669.1	See Comparison
NZ_CP028642.1	See Comparison
NZ_CP028627.1	See Comparison
NZ_CP028666.1	See Comparison
NZ_CP028645.1	See Comparison
NZ_CP028678.1	See Comparison
NZ_CP028663.1	See Comparison
NZ_CP028636.1	See Comparison
NZ_CP028624.1	See Comparison
NZ_CP028633.1	See Comparison
NZ_CP028621.1	See Comparison
NZ_CP028675.1	See Comparison
NZ_CP028648.1	See Comparison
NZ_CP028660.1	See Comparison
NZ_CP028639.1	See Comparison
NZ_CP028630.1	See Comparison
NZ_CP028615.1	See Comparison
NZ_CP040109.1	See Comparison
NZ_CP038310.1	See Comparison
NZ_CP038306.1	See Comparison
CP051822.1	See Comparison
CP051817.1	See Comparison
CP051812.1	See Comparison
CP051809.1	See Comparison
CP051838.1	See Comparison
NZ_CP061117.1	See Comparison
NZ_CP117664.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP028663.1

Sequence

Accession: NZ_CP028663.1
Description: Escherichia coli strain 119 plasmid pTA118-2, complete sequence
Source: refseq
Created at NCBI: May 8, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 8773031

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: cattle
Classification: host_associated
Host-associated Taxon:
- Bos taurus (9913)

Visualization

NZ_CP028675.1

Sequence

Accession: NZ_CP028675.1
Description: Escherichia coli strain 115 plasmid pTA115-2, complete sequence
Source: refseq
Created at NCBI: May 8, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 8773027

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: cattle
Classification: host_associated
Host-associated Taxon:
- Bos taurus (9913)

Visualization

NZ_CP028678.1

Sequence

Accession: NZ_CP028678.1
Description: Escherichia coli strain 114 plasmid pTA114-2, complete sequence
Source: refseq
Created at NCBI: May 9, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 8773026

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: cattle
Classification: host_associated
Host-associated Taxon:
- Bos taurus (9913)

Visualization

NZ_CP028666.1

Sequence

Accession: NZ_CP028666.1
Description: Escherichia coli strain 118 plasmid pTA118-2, complete sequence
Source: refseq
Created at NCBI: May 8, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 8773030

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: cattle
Classification: host_associated
Host-associated Taxon:
- Bos taurus (9913)

Visualization

NZ_CP028681.1

Sequence

Accession: NZ_CP028681.1
Description: Escherichia coli strain 113 plasmid pTA113-2, complete sequence
Source: refseq
Created at NCBI: May 9, 2019

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 8773025

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: cattle
Classification: host_associated
Host-associated Taxon:
- Bos taurus (9913)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore