Plasmid NZ_CP061117.1

Sequence

Nucleotide Information

Accession NZ_CP061117.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain S585 plasmid pS585_2, complete sequence
Source refseq
Topology circular
Length 6079 bp
GC Content 0.46 %
Created at NCBI Dec. 1, 2020



Assembly

Genome Data Information

Accession GCF_015697745.1
Assembly Coverage 300


Biosample

Curated Collection Information
Accession 15962528

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.2N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.20/120.20
Address 滨和路, 江汉社区, Changhe, Binjiang District, Zhejiang, 310052, China

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gastrointestinal disorders
DOID/SYMP
  • Gastrointestinal system disease (DOID:77 )
    • A disease of anatomical entity that is located_in the gastrointestinal tract.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
CP051822.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP040109.1 See Comparison
CP051822.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
NZ_CP028642.1 See Comparison
CP051822.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
CP051822.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
NZ_CP061117.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
NZ_CP028678.1 See Comparison
CP051809.1 See Comparison
NZ_CP028675.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP040109.1 See Comparison
NZ_CP038310.1 See Comparison
NZ_CP038306.1 See Comparison
CP051822.1 See Comparison
CP051812.1 See Comparison
NZ_CP028678.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
CP051822.1 See Comparison
CP051812.1 See Comparison
CP051809.1 See Comparison
NZ_CP028681.1 See Comparison
NZ_CP028642.1 See Comparison
NZ_CP028648.1 See Comparison
NZ_CP028666.1 See Comparison
NZ_CP028639.1 See Comparison
NZ_CP028663.1 See Comparison
NZ_CP028621.1 See Comparison
NZ_CP028672.1 See Comparison
NZ_CP028645.1 See Comparison
NZ_CP028636.1 See Comparison
NZ_CP028633.1 See Comparison
NZ_CP028675.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore