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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP028657.1
Sequence
Nucleotide Information
Accession
NZ_CP028657.1
Description
Escherichia coli strain 121 plasmid pTA121-2, complete sequence
Source
refseq
Topology
circular
Length
6078 bp
GC Content
0.46 %
Created at NCBI
May 8, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_005222025.1
Assembly Coverage
169
Biosample
Curated Collection Information
Accession
8773033
PLASMID INFORMATION
BIOSAMPLE_pathotype
Escherichia coli - STEC
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
cattle
Classification
host_associated
Host-associated Taxon
Bos taurus (
9913
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP028658.1
Similar Plasmids
based on Mash distance
NZ_CP040109.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP038306.1
See Comparison
CP051822.1
See Comparison
CP051817.1
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CP051812.1
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CP051809.1
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CP051838.1
See Comparison
NZ_CP117664.1
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NZ_CP028678.1
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NZ_CP028681.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP040109.1
See Comparison
NZ_CP038306.1
See Comparison
NZ_CP117664.1
See Comparison
CP051822.1
See Comparison
CP051817.1
See Comparison
CP051812.1
See Comparison
CP051809.1
See Comparison
CP051838.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP028678.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028681.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028657.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
NZ_CP040109.1
See Comparison
NZ_CP038306.1
See Comparison
NZ_CP117664.1
See Comparison
CP051809.1
See Comparison
CP051838.1
See Comparison
CP051822.1
See Comparison
CP051817.1
See Comparison
CP051812.1
See Comparison
CP051822.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
NZ_CP028678.1
See Comparison
NZ_CP028681.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP040109.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP038306.1
See Comparison
CP051817.1
See Comparison
CP051812.1
See Comparison
CP051809.1
See Comparison
CP051838.1
See Comparison
NZ_CP040109.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
NZ_CP117664.1
See Comparison
NZ_CP028678.1
See Comparison
NZ_CP028681.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028678.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP038306.1
See Comparison
CP051822.1
See Comparison
CP051817.1
See Comparison
CP051812.1
See Comparison
CP051809.1
See Comparison
CP051838.1
See Comparison
NZ_CP117664.1
See Comparison
NZ_CP028681.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP040109.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
NZ_CP028678.1
See Comparison
CP051822.1
See Comparison
CP051817.1
See Comparison
CP051812.1
See Comparison
CP051809.1
See Comparison
CP051838.1
See Comparison
NZ_CP117664.1
See Comparison
NZ_CP038310.1
See Comparison
NZ_CP038306.1
See Comparison
NZ_CP028681.1
See Comparison
NZ_CP028666.1
See Comparison
NZ_CP028663.1
See Comparison
NZ_CP028618.1
See Comparison
NZ_CP028669.1
See Comparison
NZ_CP028642.1
See Comparison
NZ_CP028627.1
See Comparison
NZ_CP028624.1
See Comparison
NZ_CP028645.1
See Comparison
NZ_CP028621.1
See Comparison
NZ_CP028672.1
See Comparison
NZ_CP028636.1
See Comparison
NZ_CP028633.1
See Comparison
NZ_CP028675.1
See Comparison
NZ_CP028648.1
See Comparison
NZ_CP028630.1
See Comparison
NZ_CP028660.1
See Comparison
NZ_CP028639.1
See Comparison
NZ_CP028615.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore