Plasmid NZ_CP016920.1

Sequence

Nucleotide Information

Accession NZ_CP016920.1
Description Klebsiella pneumoniae isolate 11 plasmid pColKP3_DHQP1300920, complete sequence
Source refseq
Topology circular
Length 6139 bp
GC Content 0.52 %
Created at NCBI Aug. 26, 2016



Assembly

Genome Data Information

Accession GCF_001709275.1
Assembly Coverage 139


Biosample

Curated Collection Information

Accession 4448229

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Pennsylvania
Original Query Type name
Coordinates (Lat/Lon) 40.97/-77.73
Address USA,Pennsylvania

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_CP079603.1 See Comparison
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NZ_CP079611.1 See Comparison
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NZ_CP079160.1 See Comparison
NZ_CP079183.1 See Comparison
NZ_CP079168.1 See Comparison
NZ_CP079153.1 See Comparison
NZ_CP079128.1 See Comparison
NZ_CP079142.1 See Comparison
NZ_CP079190.1 See Comparison
NZ_CP079148.1 See Comparison
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NZ_CP072411.1 See Comparison
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NZ_CP034762.1 See Comparison
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NZ_CP101121.1 See Comparison
NZ_CP132644.1 See Comparison
NZ_CP146196.1 See Comparison
NZ_CP095560.1 See Comparison
NZ_CP146184.1 See Comparison
NZ_CP146159.1 See Comparison
NZ_CP146174.1 See Comparison
NZ_CP146149.1 See Comparison
NZ_CP146189.1 See Comparison
NZ_CP146164.1 See Comparison
NZ_CP146154.1 See Comparison
NZ_CP146179.1 See Comparison
NZ_CP146169.1 See Comparison
NZ_CP127510.1 See Comparison
NZ_CP127513.1 See Comparison
NZ_CP127517.1 See Comparison
NZ_OY899164.1 See Comparison
NZ_CP141552.1 See Comparison
NZ_CP141573.1 See Comparison
NZ_CP140296.1 See Comparison
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NZ_OY978496.1 See Comparison
NZ_OY856406.1 See Comparison
NZ_KY454616.1 See Comparison
NZ_CP050165.1 See Comparison
NZ_LC507653.1 See Comparison
NZ_MF774791.1 See Comparison
NZ_CP045680.1 See Comparison
LC613148.1 See Comparison
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NZ_CP070418.1 See Comparison
NZ_CP070452.1 See Comparison
NZ_CP070428.1 See Comparison
NZ_CP070413.1 See Comparison
NZ_CP070448.1 See Comparison
NZ_CP068952.1 See Comparison
NZ_CP070433.1 See Comparison
NZ_CP068892.1 See Comparison
NZ_CP068856.1 See Comparison
NZ_CP068860.1 See Comparison
NZ_CP068930.1 See Comparison
NZ_CP068883.1 See Comparison
NZ_CP068858.1 See Comparison
NZ_CP068846.1 See Comparison
NZ_CP068853.1 See Comparison
NZ_CP068946.1 See Comparison
NZ_CP068875.1 See Comparison
NZ_CP068839.1 See Comparison
NZ_CP068306.1 See Comparison
NZ_CP068334.1 See Comparison
NZ_CP061054.1 See Comparison
NZ_CP068311.1 See Comparison
NZ_CP101881.1 See Comparison
NZ_CP083935.1 See Comparison
NZ_CP102991.1 See Comparison
NZ_CP097391.1 See Comparison
NZ_CP096175.1 See Comparison
NZ_CP096182.1 See Comparison
NZ_CP061063.1 See Comparison
NZ_CP092341.1 See Comparison
NZ_CP097241.1 See Comparison
NZ_CP095575.1 See Comparison
NZ_CP095581.1 See Comparison
NZ_CP095657.1 See Comparison
NZ_CP091603.1 See Comparison
NZ_CP090472.1 See Comparison
NZ_CP083046.1 See Comparison
NZ_CP083059.1 See Comparison
NZ_CP083050.1 See Comparison
NZ_CP084047.1 See Comparison
NZ_CP079730.1 See Comparison
NZ_CP079640.1 See Comparison
NZ_CP079671.1 See Comparison
NZ_CP078037.1 See Comparison
NZ_CP079603.1 See Comparison
NZ_CP079686.1 See Comparison
NZ_CP079611.1 See Comparison
NZ_CP079678.1 See Comparison
NZ_CP079160.1 See Comparison
NZ_CP079183.1 See Comparison
NZ_CP079168.1 See Comparison
NZ_CP079153.1 See Comparison
NZ_CP079128.1 See Comparison
NZ_CP079142.1 See Comparison
NZ_CP079190.1 See Comparison
NZ_CP079148.1 See Comparison
LC521850.1 See Comparison
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NZ_CP072411.1 See Comparison
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NZ_CP012755.1 See Comparison
NZ_CP036323.1 See Comparison
NZ_CP006802.1 See Comparison
NZ_CP036197.1 See Comparison
NZ_CP034762.1 See Comparison
CM009032.1 See Comparison
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NZ_CP033950.1 See Comparison
CP033682.1 See Comparison
NZ_CP024042.1 See Comparison
NZ_CP135510.1 See Comparison
NZ_CP137419.1 See Comparison
NZ_CP137409.1 See Comparison
NZ_CP135483.1 See Comparison
NZ_CP101121.1 See Comparison
NZ_CP132644.1 See Comparison
NZ_CP122385.1 See Comparison
NZ_CP095560.1 See Comparison
NZ_CP146196.1 See Comparison
NZ_CP146169.1 See Comparison
NZ_CP146164.1 See Comparison
NZ_CP146149.1 See Comparison
NZ_CP146154.1 See Comparison
NZ_CP146179.1 See Comparison
NZ_CP146174.1 See Comparison
NZ_CP146189.1 See Comparison
NZ_CP146184.1 See Comparison
NZ_CP146159.1 See Comparison
NZ_CP127510.1 See Comparison
NZ_CP127513.1 See Comparison
NZ_CP141552.1 See Comparison
NZ_CP127517.1 See Comparison
NZ_CP141573.1 See Comparison
NZ_CP140296.1 See Comparison
NZ_OY978496.1 See Comparison
NZ_OY899164.1 See Comparison
NZ_OY978238.1 See Comparison
NZ_OY856406.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore