Plasmid NZ_CP072416.1

Sequence

Nucleotide Information

Accession NZ_CP072416.1
Description Klebsiella pneumoniae strain B32278 plasmid p3B32278, complete sequence
Source refseq
Topology circular
Length 6141 bp
GC Content 0.52 %
Created at NCBI April 6, 2021



Assembly

Genome Data Information

Accession GCF_017742935.1
Assembly Coverage 38.7


Biosample

Curated Collection Information
Accession 18478623

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_CP078037.1 See Comparison
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NZ_CP079190.1 See Comparison
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NZ_CP095560.1 See Comparison
NZ_CP146179.1 See Comparison
NZ_CP146169.1 See Comparison
NZ_CP146184.1 See Comparison
NZ_CP146159.1 See Comparison
NZ_CP146174.1 See Comparison
NZ_CP146149.1 See Comparison
NZ_CP146189.1 See Comparison
NZ_CP146164.1 See Comparison
NZ_CP146154.1 See Comparison
NZ_LC507653.1 See Comparison
NZ_CP127510.1 See Comparison
NZ_CP127513.1 See Comparison
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NZ_CP141552.1 See Comparison
NZ_CP141573.1 See Comparison
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NZ_CP068952.1 See Comparison
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NZ_CP045680.1 See Comparison
NZ_CP070448.1 See Comparison
NZ_CP070418.1 See Comparison
NZ_CP070452.1 See Comparison
LC613148.1 See Comparison
NZ_CP070461.1 See Comparison
NZ_CP070413.1 See Comparison
NZ_CP068892.1 See Comparison
NZ_CP068856.1 See Comparison
NZ_CP068860.1 See Comparison
NZ_CP068930.1 See Comparison
NZ_CP068883.1 See Comparison
NZ_CP068858.1 See Comparison
NZ_CP068846.1 See Comparison
NZ_CP068853.1 See Comparison
NZ_CP068946.1 See Comparison
NZ_CP068875.1 See Comparison
NZ_CP070428.1 See Comparison
NZ_CP068839.1 See Comparison
NZ_CP061054.1 See Comparison
NZ_CP070433.1 See Comparison
NZ_CP068311.1 See Comparison
NZ_CP068306.1 See Comparison
NZ_CP068334.1 See Comparison
NZ_CP061063.1 See Comparison
NZ_CP101881.1 See Comparison
NZ_CP083935.1 See Comparison
NZ_CP102991.1 See Comparison
CP067714.1 See Comparison
NZ_CP096175.1 See Comparison
NZ_CP096182.1 See Comparison
NZ_CP097241.1 See Comparison
NZ_CP095575.1 See Comparison
NZ_CP095581.1 See Comparison
NZ_CP095657.1 See Comparison
NZ_CP097391.1 See Comparison
NZ_CP092341.1 See Comparison
NZ_CP091603.1 See Comparison
NZ_CP083059.1 See Comparison
NZ_CP090472.1 See Comparison
NZ_CP083046.1 See Comparison
NZ_CP083050.1 See Comparison
NZ_CP084047.1 See Comparison
NZ_CP079678.1 See Comparison
NZ_CP079671.1 See Comparison
NZ_CP078037.1 See Comparison
NZ_CP079730.1 See Comparison
NZ_CP079640.1 See Comparison
NZ_CP079160.1 See Comparison
NZ_CP079603.1 See Comparison
NZ_CP079183.1 See Comparison
NZ_CP079168.1 See Comparison
NZ_CP079153.1 See Comparison
NZ_CP079686.1 See Comparison
NZ_CP079128.1 See Comparison
NZ_CP079142.1 See Comparison
NZ_CP079190.1 See Comparison
NZ_CP079611.1 See Comparison
NZ_CP079148.1 See Comparison
LC521850.1 See Comparison
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NZ_CP072411.1 See Comparison
NZ_CP012562.1 See Comparison
NZ_CP012755.1 See Comparison
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NZ_CP036197.1 See Comparison
NZ_CP033950.1 See Comparison
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NZ_CP036323.1 See Comparison
NZ_CP034762.1 See Comparison
NZ_CP024042.1 See Comparison
NZ_CP146196.1 See Comparison
NZ_CP137419.1 See Comparison
NZ_CP137409.1 See Comparison
NZ_CP101121.1 See Comparison
NZ_CP122385.1 See Comparison
NZ_CP095560.1 See Comparison
NZ_CP146154.1 See Comparison
NZ_CP135510.1 See Comparison
NZ_CP135483.1 See Comparison
NZ_CP132644.1 See Comparison
NZ_CP146174.1 See Comparison
NZ_CP146149.1 See Comparison
NZ_CP146189.1 See Comparison
NZ_CP146164.1 See Comparison
NZ_CP146179.1 See Comparison
NZ_CP146169.1 See Comparison
NZ_CP146184.1 See Comparison
NZ_CP146159.1 See Comparison
NZ_CP141552.1 See Comparison
NZ_CP127510.1 See Comparison
NZ_CP127513.1 See Comparison
NZ_CP127517.1 See Comparison
NZ_OY899164.1 See Comparison
NZ_OY978238.1 See Comparison
NZ_OY978496.1 See Comparison
NZ_CP141573.1 See Comparison
NZ_CP140296.1 See Comparison
NZ_OY856406.1 See Comparison
NZ_LC507653.1 See Comparison
NZ_CP050165.1 See Comparison
NZ_MF774791.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore