Plasmid NZ_CP016922.1

Sequence

Nucleotide Information

Accession NZ_CP016922.1
Description Klebsiella pneumoniae isolate 11 plasmid pIncFIB_DHQP1300920, complete sequence
Source refseq
Topology circular
Length 103694 bp
GC Content 0.51 %
Created at NCBI Aug. 26, 2016



Assembly

Genome Data Information

Accession GCF_001709275.1
Assembly Coverage 139


Biosample

Curated Collection Information
Accession 4448229

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Pennsylvania
Original Query Type name
Coordinates (Lat/Lon) 40.97/-77.73
Address USA,Pennsylvania

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP140294.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
CP058800.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP140294.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_AP018749.1 See Comparison
CP034407.1 See Comparison
NZ_CP006800.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP140294.1 See Comparison
NZ_CP006800.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP006800.1 See Comparison
CP034407.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP140294.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_AP018749.1 See Comparison
CP034407.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_CP028930.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP140294.1 See Comparison
CP034407.1 See Comparison
NZ_CP006800.1 See Comparison
NZ_CP022613.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
CP058800.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP140294.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP006800.1 See Comparison
NZ_CP016922.1 See Comparison
CP034407.1 See Comparison
NZ_CP078035.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison
NZ_CP140294.1 See Comparison
NZ_CP097234.1 See Comparison
NZ_CP097239.1 See Comparison
NZ_CP022613.1 See Comparison
CP058800.1 See Comparison
NZ_CP053773.1 See Comparison
NZ_CP097226.1 See Comparison
NZ_CP006800.1 See Comparison
NZ_CP022613.1 See Comparison
CP034407.1 See Comparison
NZ_AP018749.1 See Comparison
NZ_AP018751.1 See Comparison
NZ_AP018754.1 See Comparison
NZ_CP028930.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2