Plasmid NZ_CP016524.1

Sequence

Nucleotide Information

Accession	NZ_CP016524.1
Description	Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT09004001 plasmid pSA02DT09004001_37, complete sequence
Source	refseq
Topology	circular
Length	37697 bp
GC Content	0.41 %
Created at NCBI	July 22, 2016

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (611)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_001690115.1
Assembly Coverage	65

Biosample

Curated Collection Information

Accession	5263513

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Canada,British Columbia
Original Query Type	name
Coordinates (Lat/Lon)	55.00/-125.00
Address	Canada,British Columbia

ECOSYSTEM

Original Query	Chicken Meat
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP128263.1	See Comparison
NZ_CP012922.1	See Comparison
CP082725.1	See Comparison
CP082738.1	See Comparison
NZ_CP066852.1	See Comparison
CP074237.1	See Comparison
NZ_CP016567.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NZ_CP012926.1	See Comparison
NC_021842.2	See Comparison
NZ_CP005994.1	See Comparison
NZ_CP043216.1	See Comparison
NZ_CP044182.1	See Comparison
NC_019138.1	See Comparison
CP082725.1	See Comparison
NZ_CP128263.1	See Comparison
NZ_CP031361.1	See Comparison
CP082738.1	See Comparison
NC_021842.2	See Comparison
NZ_CP066852.1	See Comparison
CP074237.1	See Comparison
NZ_CP016567.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NZ_CP012922.1	See Comparison
NZ_CP012926.1	See Comparison
NZ_CP005994.1	See Comparison
NZ_CP128263.1	See Comparison
NZ_CP043216.1	See Comparison
NZ_CP031361.1	See Comparison
NC_019138.1	See Comparison
NZ_CP044182.1	See Comparison
CP082725.1	See Comparison
CP082738.1	See Comparison
NZ_CP005994.1	See Comparison
NZ_CP066852.1	See Comparison
CP074237.1	See Comparison
NZ_CP012922.1	See Comparison
NZ_CP012926.1	See Comparison
NZ_CP016567.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NZ_CP016524.1	See Comparison
NC_019138.1	See Comparison
NC_021842.2	See Comparison
NZ_CP031361.1	See Comparison
NZ_CP044182.1	See Comparison
NZ_CP043216.1	See Comparison
CP082725.1	See Comparison
NZ_CP128263.1	See Comparison
CP082738.1	See Comparison
NZ_CP066852.1	See Comparison
NZ_CP012922.1	See Comparison
CP074237.1	See Comparison
NZ_CP016567.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NZ_CP012926.1	See Comparison
NC_021842.2	See Comparison
NZ_CP005994.1	See Comparison
NC_019138.1	See Comparison
NZ_CP043216.1	See Comparison
NZ_CP044182.1	See Comparison
NZ_CP128263.1	See Comparison
NZ_CP031361.1	See Comparison
CP082725.1	See Comparison
CP082738.1	See Comparison
NZ_CP066852.1	See Comparison
NZ_CP016567.1	See Comparison
CP074237.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NZ_CP128263.1	See Comparison
NZ_CP012922.1	See Comparison
NZ_CP012926.1	See Comparison
NC_021842.2	See Comparison
NZ_CP043216.1	See Comparison
NZ_CP031361.1	See Comparison
NZ_CP005994.1	See Comparison
NC_019138.1	See Comparison
NZ_CP044182.1	See Comparison
CP082725.1	See Comparison
CP082738.1	See Comparison
NZ_CP066852.1	See Comparison
NZ_CP016567.1	See Comparison
NZ_CP016562.1	See Comparison
NZ_CP016578.1	See Comparison
NZ_CP016583.1	See Comparison
NZ_CP016587.1	See Comparison
NZ_CP016575.1	See Comparison
NZ_CP016580.1	See Comparison
NZ_CP016564.1	See Comparison
NZ_CP016571.1	See Comparison
NZ_CP016531.1	See Comparison
NZ_CP016509.1	See Comparison
NZ_CP016518.1	See Comparison
NZ_CP016515.1	See Comparison
NZ_CP016506.1	See Comparison
NZ_CP016512.1	See Comparison
NC_021842.2	See Comparison
CP074237.1	See Comparison
NZ_CP012922.1	See Comparison
NZ_CP012926.1	See Comparison
NZ_CP005994.1	See Comparison
NC_019138.1	See Comparison
NZ_CP044182.1	See Comparison
NZ_CP043216.1	See Comparison
NZ_CP031361.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore