PLSDB
v. 2024_05_31_v2
Home
Browse
Sequence Search
Statistics
Download
API
FAQ
Sequence
Host Taxonomy
Assembly
Biosample
Similar Plasmids
Visualization
Annotations
Typing
Plasmid NZ_CP016571.1
Sequence
Nucleotide Information
Accession
NZ_CP016571.1
Description
Salmonella enterica subsp. enterica serovar Heidelberg strain AMR588-04-00320 plasmid pAMR588-04-00320_37, complete sequence
Source
refseq
Topology
circular
Length
37697 bp
GC Content
0.41 %
Created at NCBI
July 25, 2016
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (611)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_001692575.1
Assembly Coverage
125
Biosample
Curated Collection Information
Accession
5263515
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Canada,Ontario
Original Query Type
name
Coordinates (Lat/Lon)
50.00/-86.00
Address
Canada,Ontario
ECOSYSTEM
Original Query
Chicken feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Gallus gallus (
9031
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP016572.1
NZ_CP016570.1
Similar Plasmids
based on Mash distance
CP082725.1
See Comparison
CP082738.1
See Comparison
NZ_CP066852.1
See Comparison
CP074237.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016531.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP016524.1
See Comparison
NZ_CP005994.1
See Comparison
NZ_CP016567.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP012926.1
See Comparison
NC_019138.1
See Comparison
NC_021842.2
See Comparison
NZ_CP044182.1
See Comparison
CP082738.1
See Comparison
NZ_CP043216.1
See Comparison
NZ_CP031361.1
See Comparison
NZ_CP128263.1
See Comparison
NZ_CP016567.1
See Comparison
CP082725.1
See Comparison
NZ_CP066852.1
See Comparison
CP074237.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP016524.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016531.1
See Comparison
NC_021842.2
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP012926.1
See Comparison
NZ_CP128263.1
See Comparison
NZ_CP043216.1
See Comparison
NZ_CP031361.1
See Comparison
NZ_CP005994.1
See Comparison
NC_019138.1
See Comparison
NZ_CP044182.1
See Comparison
CP082725.1
See Comparison
CP082738.1
See Comparison
NZ_CP066852.1
See Comparison
NZ_CP016524.1
See Comparison
CP074237.1
See Comparison
NC_019138.1
See Comparison
NZ_CP016567.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016531.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP005994.1
See Comparison
NC_021842.2
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP012926.1
See Comparison
NZ_CP044182.1
See Comparison
CP082725.1
See Comparison
NZ_CP043216.1
See Comparison
NZ_CP031361.1
See Comparison
NZ_CP128263.1
See Comparison
CP082738.1
See Comparison
NZ_CP066852.1
See Comparison
NZ_CP005994.1
See Comparison
CP074237.1
See Comparison
NZ_CP016567.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016531.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP016524.1
See Comparison
NC_021842.2
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP012926.1
See Comparison
NC_019138.1
See Comparison
NZ_CP044182.1
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP043216.1
See Comparison
NZ_CP031361.1
See Comparison
NZ_CP128263.1
See Comparison
CP082725.1
See Comparison
CP082738.1
See Comparison
NZ_CP066852.1
See Comparison
CP074237.1
See Comparison
NZ_CP012926.1
See Comparison
NZ_CP005994.1
See Comparison
NZ_CP044182.1
See Comparison
NZ_CP016567.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016531.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP016524.1
See Comparison
NC_019138.1
See Comparison
NC_021842.2
See Comparison
NZ_CP031361.1
See Comparison
NZ_CP043216.1
See Comparison
CP082725.1
See Comparison
NZ_CP128263.1
See Comparison
CP082738.1
See Comparison
NZ_CP066852.1
See Comparison
CP074237.1
See Comparison
NZ_CP016567.1
See Comparison
NZ_CP016587.1
See Comparison
NZ_CP016575.1
See Comparison
NZ_CP016580.1
See Comparison
NZ_CP016564.1
See Comparison
NZ_CP016571.1
See Comparison
NZ_CP016531.1
See Comparison
NZ_CP016509.1
See Comparison
NZ_CP016518.1
See Comparison
NZ_CP016515.1
See Comparison
NZ_CP016506.1
See Comparison
NZ_CP016512.1
See Comparison
NZ_CP016524.1
See Comparison
NZ_CP016562.1
See Comparison
NZ_CP016578.1
See Comparison
NZ_CP016583.1
See Comparison
NC_021842.2
See Comparison
NZ_CP012922.1
See Comparison
NZ_CP012926.1
See Comparison
NZ_CP005994.1
See Comparison
NZ_CP044182.1
See Comparison
NC_019138.1
See Comparison
NZ_CP128263.1
See Comparison
NZ_CP043216.1
See Comparison
NZ_CP031361.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore