Plasmid NZ_CP016522.1

Sequence

Nucleotide Information

Accession	NZ_CP016522.1
Description	Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT09004001 plasmid pSA02DT09004001_101, complete sequence
Source	refseq
Topology	circular
Length	101723 bp
GC Content	0.50 %
Created at NCBI	July 22, 2016

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (611)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_001690115.1
Assembly Coverage	65

Biosample

Curated Collection Information

Accession	5263513

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Canada,British Columbia
Original Query Type	name
Coordinates (Lat/Lon)	55.00/-125.00
Address	Canada,British Columbia

ECOSYSTEM

Original Query	Chicken Meat
Classification	food,meat
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP051405.1	See Comparison
CP119489.1	See Comparison
NZ_CP103546.1	See Comparison
CP090403.1	See Comparison
CP092323.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
NZ_CP016568.1	See Comparison
CP082534.1	See Comparison
CP082563.1	See Comparison
CP082694.1	See Comparison
CP082656.1	See Comparison
CP082435.1	See Comparison
CP082504.1	See Comparison
CP082507.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP051405.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP032264.1	See Comparison
NZ_CP146669.1	See Comparison
NZ_CP044183.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP146252.1	See Comparison
NZ_CP103546.1	See Comparison
CP119489.1	See Comparison
CP090403.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
CP092323.1	See Comparison
CP082507.1	See Comparison
CP082534.1	See Comparison
CP082563.1	See Comparison
CP082694.1	See Comparison
CP082656.1	See Comparison
CP082435.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
CP082504.1	See Comparison
NZ_CP016568.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP016522.1	See Comparison
NZ_CP044183.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP032264.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP146252.1	See Comparison
NZ_CP146669.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_CP051405.1	See Comparison
CP119489.1	See Comparison
NZ_CP103546.1	See Comparison
CP090403.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
CP082534.1	See Comparison
CP082563.1	See Comparison
CP082694.1	See Comparison
CP082656.1	See Comparison
CP092323.1	See Comparison
NZ_CP016568.1	See Comparison
CP082435.1	See Comparison
CP082504.1	See Comparison
CP082507.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP044183.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP146669.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP032264.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP146252.1	See Comparison
CP092323.1	See Comparison
NZ_CP051405.1	See Comparison
CP119489.1	See Comparison
NZ_CP103546.1	See Comparison
CP090403.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
CP082534.1	See Comparison
CP082694.1	See Comparison
CP082656.1	See Comparison
CP082435.1	See Comparison
CP082504.1	See Comparison
CP082507.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
CP082563.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP016568.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP044183.1	See Comparison
NZ_CP146252.1	See Comparison
NZ_CP032264.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP146669.1	See Comparison
NZ_CP051405.1	See Comparison
CP119489.1	See Comparison
NZ_CP103546.1	See Comparison
CP090403.1	See Comparison
CP082694.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
CP092323.1	See Comparison
CP082656.1	See Comparison
CP082435.1	See Comparison
CP082504.1	See Comparison
CP082507.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP032264.1	See Comparison
CP082534.1	See Comparison
CP082563.1	See Comparison
NZ_CP016568.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP044183.1	See Comparison
CP092323.1	See Comparison
NZ_CP146252.1	See Comparison
NZ_CP051405.1	See Comparison
CP119489.1	See Comparison
NZ_CP103546.1	See Comparison
NZ_MW052848.1	See Comparison
NZ_MW052849.1	See Comparison
NZ_MW052847.1	See Comparison
NZ_CP146669.1	See Comparison
CP090403.1	See Comparison
CP082534.1	See Comparison
CP082656.1	See Comparison
CP082435.1	See Comparison
CP082504.1	See Comparison
CP082507.1	See Comparison
CP082497.1	See Comparison
CP082717.1	See Comparison
CP082604.1	See Comparison
CP082563.1	See Comparison
CP082694.1	See Comparison
NZ_CP012936.1	See Comparison
NZ_CP016572.1	See Comparison
NZ_CP016516.1	See Comparison
NZ_CP016568.1	See Comparison
NZ_CP012923.1	See Comparison
NZ_CP028315.1	See Comparison
NZ_CP044183.1	See Comparison
NZ_CP032264.1	See Comparison
NZ_CP146252.1	See Comparison
NZ_CP022064.1	See Comparison
NZ_CP146669.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore