Plasmid NZ_CP016564.1

Sequence

Nucleotide Information

Accession NZ_CP016564.1
Description Salmonella enterica subsp. enterica serovar Heidelberg strain A3EZ223 plasmid pA3EZ223_37, complete sequence
Source refseq
Topology circular
Length 37697 bp
GC Content 0.41 %
Created at NCBI July 25, 2016



Assembly

Genome Data Information

Accession GCF_001692495.1
Assembly Coverage 63


Biosample

Curated Collection Information
Accession 5277890

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,British Columbia
Original Query Type name
Coordinates (Lat/Lon) 55.00/-125.00
Address Canada,British Columbia

ECOSYSTEM
Original Query Homo sapiens,human
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP074237.1 See Comparison
NZ_CP016567.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP012926.1 See Comparison
NZ_CP005994.1 See Comparison
NC_021842.2 See Comparison
NC_019138.1 See Comparison
NZ_CP044182.1 See Comparison
NZ_CP043216.1 See Comparison
NZ_CP031361.1 See Comparison
NZ_CP128263.1 See Comparison
NZ_CP012926.1 See Comparison
NZ_CP066852.1 See Comparison
CP074237.1 See Comparison
NZ_CP016567.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
CP082725.1 See Comparison
CP082738.1 See Comparison
NZ_CP044182.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP005994.1 See Comparison
NC_021842.2 See Comparison
NC_019138.1 See Comparison
NZ_CP031361.1 See Comparison
NZ_CP043216.1 See Comparison
NZ_CP128263.1 See Comparison
NZ_CP016567.1 See Comparison
CP082725.1 See Comparison
CP082738.1 See Comparison
NZ_CP066852.1 See Comparison
CP074237.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
NC_019138.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP012926.1 See Comparison
NZ_CP005994.1 See Comparison
NC_021842.2 See Comparison
NZ_CP044182.1 See Comparison
NZ_CP043216.1 See Comparison
CP074237.1 See Comparison
CP082725.1 See Comparison
CP082738.1 See Comparison
NZ_CP066852.1 See Comparison
NZ_CP031361.1 See Comparison
NZ_CP128263.1 See Comparison
NZ_CP016567.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016564.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP012926.1 See Comparison
NZ_CP005994.1 See Comparison
NC_021842.2 See Comparison
NZ_CP044182.1 See Comparison
NC_019138.1 See Comparison
CP082725.1 See Comparison
NZ_CP043216.1 See Comparison
NZ_CP031361.1 See Comparison
NZ_CP128263.1 See Comparison
CP082738.1 See Comparison
NZ_CP016567.1 See Comparison
NZ_CP066852.1 See Comparison
CP074237.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP012926.1 See Comparison
NZ_CP005994.1 See Comparison
NZ_CP043216.1 See Comparison
NC_021842.2 See Comparison
NC_019138.1 See Comparison
NZ_CP044182.1 See Comparison
NZ_CP031361.1 See Comparison
CP082725.1 See Comparison
NZ_CP128263.1 See Comparison
CP082738.1 See Comparison
NZ_CP066852.1 See Comparison
NZ_CP016567.1 See Comparison
CP074237.1 See Comparison
NZ_CP016562.1 See Comparison
NZ_CP016578.1 See Comparison
NZ_CP016583.1 See Comparison
NZ_CP016587.1 See Comparison
NZ_CP016575.1 See Comparison
NZ_CP016580.1 See Comparison
NZ_CP016571.1 See Comparison
NZ_CP016531.1 See Comparison
NZ_CP016509.1 See Comparison
NZ_CP016518.1 See Comparison
NZ_CP016515.1 See Comparison
NZ_CP016506.1 See Comparison
NZ_CP016512.1 See Comparison
NZ_CP016524.1 See Comparison
NZ_CP128263.1 See Comparison
NZ_CP012922.1 See Comparison
NZ_CP012926.1 See Comparison
NC_021842.2 See Comparison
NZ_CP043216.1 See Comparison
NZ_CP005994.1 See Comparison
NC_019138.1 See Comparison
NZ_CP044182.1 See Comparison
NZ_CP031361.1 See Comparison
CP082725.1 See Comparison
CP082738.1 See Comparison
NZ_CP066852.1 See Comparison


Identical Plasmids

100% Sequence Identity





  • Sequence
    • Accession: NZ_CP016509.1
    • Description: Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-003 plasmid pSH12-003_37, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2016

  • Host Taxonomy
    Assigned Host: Salmonella enterica (611)
  • Biosample
    Accession: 4334629
  • GEOGRAPHICAL INFORMATION
    • Original Query: Canada,Quebec
    • Original Query Type: name
    • Address: Canada,Quebec
    • Coordinates (Lat/Lon): 52.48/-71.83
  • ECOSYSTEM
    • Original Query: Homo sapiens,human
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Salmonella gastroenteritis
    • DOID/SYMP:
      • Salmonellosis (DOID:0060859 )
        • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP016506.1
    • Description: Salmonella enterica subsp. enterica serovar Heidelberg strain SH12-007 plasmid pSH12-007_37, complete sequence
    • Source: refseq
    • Created at NCBI: July 22, 2016

  • Host Taxonomy
    Assigned Host: Salmonella enterica (611)
  • Biosample
    Accession: 4334633
  • GEOGRAPHICAL INFORMATION
    • Original Query: Canada,Quebec
    • Original Query Type: name
    • Address: Canada,Quebec
    • Coordinates (Lat/Lon): 52.48/-71.83
  • ECOSYSTEM
    • Original Query: Homo sapiens,human
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Salmonella gastroenteritis
    • DOID/SYMP:
      • Salmonellosis (DOID:0060859 )
        • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

    • Visualization

    PNG JSON





Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore