Plasmid NZ_CP029183.1

Sequence

Nucleotide Information

Accession	NZ_CP029183.1
Description	Escherichia coli strain H9Ecoli plasmid p4-H9, complete sequence
Source	refseq
Topology	circular
Length	1551 bp
GC Content	0.52 %
Created at NCBI	May 12, 2018

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_003111785.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	8932127

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	35N;119.3E
Original Query Type	coordinates
Coordinates (Lat/Lon)	35.00/119.30
Address	Ganyu District, Lianyungang, Jiangsu, China

ECOSYSTEM

Original Query	Homo sapiens,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP115355.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
NZ_CP045686.1	See Comparison
NZ_CP070032.1	See Comparison
NZ_CP101221.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW968382.1	See Comparison
OW969926.1	See Comparison
OW969848.1	See Comparison
OW968373.1	See Comparison
NZ_CP148517.1	See Comparison
OW968468.1	See Comparison
OW968275.1	See Comparison
OW968224.1	See Comparison
NZ_CP060986.1	See Comparison
NZ_CP055209.1	See Comparison
CP090280.1	See Comparison
CP077360.1	See Comparison
CP077356.1	See Comparison
NZ_CP012630.1	See Comparison
NZ_CP115355.1	See Comparison
CP077252.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
NZ_CP045686.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
NZ_CP070032.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP101221.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
OW969926.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW969848.1	See Comparison
OW968382.1	See Comparison
OW968373.1	See Comparison
OW968275.1	See Comparison
OW968224.1	See Comparison
NZ_CP060986.1	See Comparison
OW968468.1	See Comparison
NZ_CP055209.1	See Comparison
CP077360.1	See Comparison
CP090280.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP115355.1	See Comparison
NZ_CP012630.1	See Comparison
NZ_CP029183.1	See Comparison
NZ_CP045686.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP070032.1	See Comparison
OX030759.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
NZ_CP101221.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW968224.1	See Comparison
OW969926.1	See Comparison
OW969848.1	See Comparison
OW968468.1	See Comparison
OW968382.1	See Comparison
OW968373.1	See Comparison
OW968275.1	See Comparison
NZ_CP060986.1	See Comparison
NZ_CP070032.1	See Comparison
CP077360.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
NZ_CP045686.1	See Comparison
NZ_CP055209.1	See Comparison
CP090280.1	See Comparison
NZ_CP012630.1	See Comparison
NZ_CP115355.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
OW969926.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
NZ_CP101221.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW969848.1	See Comparison
OW968382.1	See Comparison
OW968373.1	See Comparison
OW968468.1	See Comparison
OW968275.1	See Comparison
OW968224.1	See Comparison
NZ_CP055209.1	See Comparison
NZ_CP060986.1	See Comparison
CP077360.1	See Comparison
CP090280.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP012630.1	See Comparison
OW968468.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP070032.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP101221.1	See Comparison
OW968224.1	See Comparison
NZ_CP115355.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
NZ_CP045686.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW969926.1	See Comparison
OW969848.1	See Comparison
OW968373.1	See Comparison
OW968382.1	See Comparison
OW968275.1	See Comparison
NZ_CP012630.1	See Comparison
NZ_CP060986.1	See Comparison
NZ_CP055209.1	See Comparison
CP090280.1	See Comparison
CP077360.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP115355.1	See Comparison
CP057721.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
CP057712.1	See Comparison
NZ_CP045686.1	See Comparison
NZ_CP101221.1	See Comparison
NZ_CP070032.1	See Comparison
NZ_AP022331.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP116144.1	See Comparison
OW969848.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
CP090280.1	See Comparison
OW969926.1	See Comparison
OW968373.1	See Comparison
OW968275.1	See Comparison
OW968224.1	See Comparison
NZ_CP060986.1	See Comparison
OW968468.1	See Comparison
OW968382.1	See Comparison
NZ_CP055209.1	See Comparison
NZ_CP116135.1	See Comparison
NZ_CP115355.1	See Comparison
NZ_CP148517.1	See Comparison
NZ_CP148460.1	See Comparison
NZ_CP148422.1	See Comparison
NZ_CP045686.1	See Comparison
NZ_CP070032.1	See Comparison
NZ_AP022331.1	See Comparison
CP077360.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP012630.1	See Comparison
CP057721.1	See Comparison
CP057712.1	See Comparison
NZ_CP116144.1	See Comparison
NZ_CP101221.1	See Comparison
OW969848.1	See Comparison
OX030759.1	See Comparison
OX030727.1	See Comparison
OX030717.1	See Comparison
OW968275.1	See Comparison
OW969926.1	See Comparison
OW968468.1	See Comparison
OW968224.1	See Comparison
OW968382.1	See Comparison
OW968373.1	See Comparison
NZ_CP060986.1	See Comparison
CP077360.1	See Comparison
NZ_CP055209.1	See Comparison
CP090280.1	See Comparison
CP077356.1	See Comparison
CP077252.1	See Comparison
NZ_CP012630.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP148460.1

Sequence

Accession: NZ_CP148460.1
Description: Escherichia coli strain Z1323CEC0009 plasmid pZ1323CEC0009-8, complete sequence
Source: refseq
Created at NCBI: April 5, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 40441576

GEOGRAPHICAL INFORMATION

Original Query: South Korea
Original Query Type: name
Address: South Korea
Coordinates (Lat/Lon): 36.56/127.94

ECOSYSTEM

Original Query: Chicken,single cell
Classification: cell_culture,host_associated
Host-associated Taxon:
- Gallus gallus (9031)

Visualization

NZ_CP148422.1

Sequence

Accession: NZ_CP148422.1
Description: Escherichia coli strain Z1323CEC0016 plasmid pZ1323CEC0016-7, complete sequence
Source: refseq
Created at NCBI: April 5, 2024

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 40441583

GEOGRAPHICAL INFORMATION

Original Query: South Korea
Original Query Type: name
Address: South Korea
Coordinates (Lat/Lon): 36.56/127.94

ECOSYSTEM

Original Query: Chicken,single cell
Classification: cell_culture,host_associated
Host-associated Taxon:
- Gallus gallus (9031)

Visualization

NZ_CP101221.1

Sequence

Accession: NZ_CP101221.1
Description: Escherichia coli strain EC21Z-147 plasmid pEC21Z147-2K-3, complete sequence
Source: refseq
Created at NCBI: July 19, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 29593414

GEOGRAPHICAL INFORMATION

Original Query: China,Zhejiang
Original Query Type: name
Address: China,Zhejiang
Coordinates (Lat/Lon): 29.00/120.00

ECOSYSTEM

Original Query: Homo sapiens,cell culture
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP060986.1

Sequence

Accession: NZ_CP060986.1
Description: Escherichia coli strain EC3 plasmid pEC3-8, complete sequence
Source: refseq
Created at NCBI: March 16, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 15904648

GEOGRAPHICAL INFORMATION

Original Query: China,Hangzhou
Original Query Type: name
Address: China,Hangzhou
Coordinates (Lat/Lon): 30.25/120.21

ECOSYSTEM

Original Query: Homo sapiens,sputum
Classification: host_associated,respiratory_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

CP090280.1

Sequence

Accession: CP090280.1
Description: Escherichia coli strain E-T207 plasmid punnamed3, complete sequence
Source: insd
Created at NCBI: Jan. 10, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 24394416

GEOGRAPHICAL INFORMATION

Original Query: China
Original Query Type: name
Address: China
Coordinates (Lat/Lon): 34.41/86.03

ECOSYSTEM

Original Query: Homo sapiens,anal swab specimens
Classification: gastrointestinal_system,host_associated,rectal
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2