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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP107013.1
Sequence
Nucleotide Information
Accession
NZ_CP107013.1
Description
Salmonella enterica subsp. enterica serovar Paratyphi B strain SZ21B23 plasmid pSZB23-3, complete sequence
Source
refseq
Topology
circular
Length
4072 bp
GC Content
0.50 %
Created at NCBI
Oct. 19, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Salmonella enterica (57045)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Salmonella (590)
Species
Salmonella_enterica (28901)
Strain
Assembly
Genome Data Information
Accession
GCF_025725745.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
31136160
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
22.32N;114.03E
Original Query Type
coordinates
Coordinates (Lat/Lon)
22.32/114.03
Address
Wan Tuk, Tsuen Wan District, New Territories, Hong Kong, China
ECOSYSTEM
Original Query
patient,fecal sample
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
gallstone
DOID/SYMP
Gallbladder disease
(
DOID:0060262
)
A gastrointestinal system disease that is located_in the gallbladder.
Visualization
PNG
JSON
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Expand all
Plasmids from same Biosample
NZ_CP107012.1
NZ_CP107011.1
Similar Plasmids
based on Mash distance
NZ_CP096830.1
See Comparison
CP088720.1
See Comparison
CP088350.1
See Comparison
NZ_CP085702.1
See Comparison
CP082494.1
See Comparison
NZ_CP072862.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP015142.1
See Comparison
NZ_CP012629.1
See Comparison
NC_010885.1
See Comparison
NZ_CP023824.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_CP124479.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP140629.1
See Comparison
NZ_CP148369.1
See Comparison
NZ_CP107239.1
See Comparison
CP056905.1
See Comparison
CP056634.1
See Comparison
CP056616.1
See Comparison
CP057720.1
See Comparison
CP057711.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP043410.1
See Comparison
CP052384.1
See Comparison
NZ_CP072862.1
See Comparison
NZ_CP070014.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_OP242266.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP101207.1
See Comparison
NZ_OW968293.1
See Comparison
CP114339.1
See Comparison
CP114350.1
See Comparison
NZ_CP113491.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP096830.1
See Comparison
CP088720.1
See Comparison
CP088350.1
See Comparison
NZ_CP085702.1
See Comparison
CP082494.1
See Comparison
NZ_CP012629.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP023824.1
See Comparison
NZ_CP015142.1
See Comparison
NC_010885.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_CP124479.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_CP107239.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP148369.1
See Comparison
CP057720.1
See Comparison
NZ_CP140629.1
See Comparison
CP057711.1
See Comparison
NZ_CP043410.1
See Comparison
CP056905.1
See Comparison
CP056634.1
See Comparison
CP056616.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP070014.1
See Comparison
CP052384.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_OP242266.1
See Comparison
CP114339.1
See Comparison
CP114350.1
See Comparison
NZ_CP113491.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP096830.1
See Comparison
NZ_CP101207.1
See Comparison
NZ_OW968293.1
See Comparison
NZ_CP085702.1
See Comparison
CP088720.1
See Comparison
CP088350.1
See Comparison
CP082494.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP072862.1
See Comparison
NZ_CP012629.1
See Comparison
NZ_CP015142.1
See Comparison
NZ_CP023824.1
See Comparison
NC_010885.1
See Comparison
NZ_CP043410.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP107239.1
See Comparison
CP057720.1
See Comparison
CP057711.1
See Comparison
CP056905.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_CP124479.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP148369.1
See Comparison
NZ_CP140629.1
See Comparison
CP056634.1
See Comparison
CP056616.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
CP052384.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP070014.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
CP114339.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_OP242266.1
See Comparison
CP114350.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP113491.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_OW968293.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP101207.1
See Comparison
CP088720.1
See Comparison
NZ_CP096830.1
See Comparison
CP088350.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP085702.1
See Comparison
CP082494.1
See Comparison
NZ_CP072862.1
See Comparison
NC_010885.1
See Comparison
NZ_CP012629.1
See Comparison
NZ_CP015142.1
See Comparison
NZ_CP023824.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_CP124479.1
See Comparison
CP052384.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP140629.1
See Comparison
CP056616.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP148369.1
See Comparison
NZ_CP107239.1
See Comparison
CP057720.1
See Comparison
CP057711.1
See Comparison
CP056905.1
See Comparison
CP056634.1
See Comparison
NZ_CP043410.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP070014.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
CP114339.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_OP242266.1
See Comparison
CP114350.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP113491.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_OW968293.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP101207.1
See Comparison
NZ_CP085702.1
See Comparison
NZ_CP096830.1
See Comparison
CP088720.1
See Comparison
CP088350.1
See Comparison
CP082494.1
See Comparison
NZ_CP072862.1
See Comparison
NZ_CP015142.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP012629.1
See Comparison
NC_010885.1
See Comparison
NZ_CP023824.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_CP124479.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP148369.1
See Comparison
CP056616.1
See Comparison
NZ_CP107239.1
See Comparison
NZ_CP140629.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
NZ_CP043410.1
See Comparison
CP057720.1
See Comparison
CP057711.1
See Comparison
CP056905.1
See Comparison
CP056634.1
See Comparison
CP052384.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP070014.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
NZ_OP242266.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_OW968293.1
See Comparison
NZ_CP113491.1
See Comparison
CP114339.1
See Comparison
CP114350.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP101207.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP096830.1
See Comparison
NZ_CP085702.1
See Comparison
CP088350.1
See Comparison
CP088720.1
See Comparison
NC_010885.1
See Comparison
CP082494.1
See Comparison
NZ_CP072862.1
See Comparison
NZ_CP071079.1
See Comparison
NZ_CP015142.1
See Comparison
NZ_CP012629.1
See Comparison
NZ_CP023824.1
See Comparison
NZ_CP151319.1
See Comparison
NZ_CP124466.1
See Comparison
NZ_OZ038593.1
See Comparison
NZ_CP135252.1
See Comparison
NZ_CP082071.1
See Comparison
NZ_CP124479.1
See Comparison
CP052384.1
See Comparison
NZ_CP149847.1
See Comparison
NZ_CP107239.1
See Comparison
NZ_CP148336.1
See Comparison
NZ_CP148369.1
See Comparison
NZ_CP140629.1
See Comparison
CP057720.1
See Comparison
CP057711.1
See Comparison
CP056905.1
See Comparison
CP056634.1
See Comparison
CP056616.1
See Comparison
CP056611.1
See Comparison
CP056602.1
See Comparison
NZ_CP043410.1
See Comparison
NZ_AP022176.1
See Comparison
NZ_CP051723.1
See Comparison
NZ_CP070120.1
See Comparison
NZ_CP069888.1
See Comparison
NZ_CP070014.1
See Comparison
NZ_AP022220.1
See Comparison
CP098959.1
See Comparison
NZ_CP113491.1
See Comparison
NZ_OP242266.1
See Comparison
CP114339.1
See Comparison
CP114350.1
See Comparison
NZ_CP107013.1
See Comparison
NZ_CP103543.1
See Comparison
NZ_CP100681.1
See Comparison
NZ_CP101230.1
See Comparison
NZ_CP101207.1
See Comparison
NZ_OW968293.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore