Plasmid NZ_CP011608.1

Sequence

Nucleotide Information

Accession	NZ_CP011608.1
Description	Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-45, complete sequence
Source	refseq
Topology	circular
Length	44846 bp
GC Content	0.48 %
Created at NCBI	June 18, 2015

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter freundii (546)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_freundii (546)
Strain

Assembly

Genome Data Information

Accession	GCF_001022155.1
Assembly Coverage	115

Biosample

Curated Collection Information

Accession	3733741

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	38.14N;78.45W
Original Query Type	coordinates
Coordinates (Lat/Lon)	38.14/-78.45
Address	Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States

ECOSYSTEM

Original Query	Homo sapiens,Urine/Genitourinary
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP018668.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP026239.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP021743.1	See Comparison
CP021750.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
CP074550.1	See Comparison
NZ_CP026239.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP021743.1	See Comparison
CP021750.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
CP139246.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_OP378643.1	See Comparison
CP074550.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP021743.1	See Comparison
CP021750.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_OQ821045.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_OQ821028.1	See Comparison
CP074550.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP021743.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP026239.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP021743.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_OP378643.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison
NZ_CP018668.1	See Comparison
CP139246.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
CP074550.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP021743.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore