Plasmid NZ_CP018668.1

Sequence

Nucleotide Information

Accession NZ_CP018668.1
Description Klebsiella pneumoniae strain CAV1042 plasmid pKPC_CAV1042-44, complete sequence
Source refseq
Topology circular
Length 43621 bp
GC Content 0.48 %
Created at NCBI Dec. 20, 2016



Assembly

Genome Data Information

Accession GCF_001908515.1
Assembly Coverage 170


Biosample

Curated Collection Information
Accession 3024576

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 38.14N;78.45W
Original Query Type coordinates
Coordinates (Lat/Lon) 38.14/-78.45
Address Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Urinary Tract Infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP009465.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_CP054283.1 See Comparison
NZ_OP378643.1 See Comparison
CP074550.1 See Comparison
NZ_CP021743.1 See Comparison
NZ_CP098331.1 See Comparison
CP021750.1 See Comparison
NZ_CP037739.1 See Comparison
NZ_CP017937.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP010379.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_CP026239.1 See Comparison
CP139246.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_CP009465.1 See Comparison
NZ_CP098331.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_CP054283.1 See Comparison
NZ_OP378643.1 See Comparison
CP074550.1 See Comparison
NZ_CP021743.1 See Comparison
CP021750.1 See Comparison
NZ_CP037739.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP017937.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
NZ_CP010379.1 See Comparison
CP139246.1 See Comparison
NZ_CP026239.1 See Comparison
NZ_CP009465.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP054283.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_OP378643.1 See Comparison
NZ_CP017937.1 See Comparison
CP074550.1 See Comparison
NZ_CP021743.1 See Comparison
CP021750.1 See Comparison
NZ_CP098331.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
CP139246.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP010379.1 See Comparison
NZ_CP026239.1 See Comparison
NZ_CP037739.1 See Comparison
NZ_CP009465.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison
CP074550.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_CP054283.1 See Comparison
NZ_OP378643.1 See Comparison
NZ_CP098331.1 See Comparison
NZ_CP017937.1 See Comparison
NZ_CP021743.1 See Comparison
CP021750.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
NZ_CP037739.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP010379.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP026239.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison
CP139246.1 See Comparison
NZ_CP009465.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_CP054283.1 See Comparison
NZ_CP098331.1 See Comparison
CP074550.1 See Comparison
NZ_OP378643.1 See Comparison
NZ_CP021743.1 See Comparison
CP021750.1 See Comparison
NZ_CP009465.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP010379.1 See Comparison
NZ_CP026239.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison
NZ_CP017937.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
NZ_CP037739.1 See Comparison
CP139246.1 See Comparison
NZ_CP017937.1 See Comparison
NZ_OP378643.1 See Comparison
NZ_CP018668.1 See Comparison
NZ_CP054297.1 See Comparison
NZ_CP054288.1 See Comparison
NZ_CP054283.1 See Comparison
CP074550.1 See Comparison
NZ_CP098331.1 See Comparison
NZ_CP021743.1 See Comparison
CP021750.1 See Comparison
NZ_CP010374.1 See Comparison
NZ_CP011575.1 See Comparison
NZ_CP011608.1 See Comparison
NZ_CP011582.1 See Comparison
NZ_CP011598.1 See Comparison
NZ_CP010379.1 See Comparison
NZ_OQ821045.1 See Comparison
NZ_CP037739.1 See Comparison
NZ_CP026239.1 See Comparison
CP139246.1 See Comparison
NZ_OQ821028.1 See Comparison
NZ_OQ821039.1 See Comparison
NZ_OQ821048.1 See Comparison
NZ_OQ821043.1 See Comparison
NZ_OQ821044.1 See Comparison
NZ_OQ821029.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore