Plasmid NZ_CP054283.1

Sequence

Nucleotide Information

Accession	NZ_CP054283.1
Description	Escherichia coli strain IDR1900005638-01-02 plasmid p5E44, complete sequence
Source	refseq
Topology	circular
Length	43621 bp
GC Content	0.48 %
Created at NCBI	Aug. 13, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_014169995.1
Assembly Coverage	234

Biosample

Curated Collection Information

Accession	15086849

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	45N;69W
Original Query Type	coordinates
Coordinates (Lat/Lon)	45.00/-69.00
Address	Marsh Road, Corinth, Penobscot County, Maine, 04427, United States

ECOSYSTEM

Original Query	Homo sapiens,Rectal swab
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_CP054284.1

Similar Plasmids

based on Mash distance

NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP054283.1	See Comparison
NZ_OP378643.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP021743.1	See Comparison
CP021750.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_OQ821044.1	See Comparison
CP139246.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP021743.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP026239.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP054288.1	See Comparison
CP021750.1	See Comparison
CP074550.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP021743.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010379.1	See Comparison
CP139246.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_OQ821045.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_OP378643.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_CP021743.1	See Comparison
CP021750.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_OQ821045.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP009465.1	See Comparison
CP074550.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP021743.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_OQ821045.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP054297.1	See Comparison
NZ_CP009465.1	See Comparison
NZ_CP054288.1	See Comparison
NZ_OP378643.1	See Comparison
NZ_CP021743.1	See Comparison
CP074550.1	See Comparison
NZ_CP098331.1	See Comparison
CP021750.1	See Comparison
NZ_CP026239.1	See Comparison
NZ_CP018668.1	See Comparison
NZ_CP010374.1	See Comparison
NZ_CP010379.1	See Comparison
NZ_CP037739.1	See Comparison
NZ_CP017937.1	See Comparison
NZ_CP011575.1	See Comparison
NZ_CP011608.1	See Comparison
NZ_CP011582.1	See Comparison
NZ_CP011598.1	See Comparison
NZ_OQ821045.1	See Comparison
CP139246.1	See Comparison
NZ_OQ821028.1	See Comparison
NZ_OQ821039.1	See Comparison
NZ_OQ821048.1	See Comparison
NZ_OQ821043.1	See Comparison
NZ_OQ821044.1	See Comparison
NZ_OQ821029.1	See Comparison
NZ_CP009465.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP054297.1

Sequence

Accession: NZ_CP054297.1
Description: Citrobacter freundii strain IDR1800045912-01-00 plasmid p1C44, complete sequence
Source: refseq
Created at NCBI: Aug. 13, 2020

Host Taxonomy

Assigned Host: Citrobacter freundii (546)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Citrobacter (544)
Species : Citrobacter_freundii (546)
Strain:

Biosample

Accession: 15086845

GEOGRAPHICAL INFORMATION

Original Query: 45N;69W
Original Query Type: coordinates
Address: Marsh Road, Corinth, Penobscot County, Maine, 04427, United States
Coordinates (Lat/Lon): 45.00/-69.00

ECOSYSTEM

Original Query: Homo sapiens,urine
Classification: host_associated,urinary_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP037739.1

Sequence

Accession: NZ_CP037739.1
Description: Citrobacter freundii strain CAV1857 plasmid pKPC_CAV1857-43, complete sequence
Source: refseq
Created at NCBI: March 16, 2019

Host Taxonomy

Assigned Host: Citrobacter freundii (546)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Citrobacter (544)
Species : Citrobacter_freundii (546)
Strain:

Biosample

Accession: 11055879

GEOGRAPHICAL INFORMATION

Original Query: USA,Charlottesville
Original Query Type: name
Address: USA,Charlottesville
Coordinates (Lat/Lon): 38.03/-78.48

ECOSYSTEM

Original Query: cell culture,hospital sink
Classification: anthropogenic,cell_culture,construction,hospital
Host-associated Taxon:

Visualization

NZ_OQ821039.1

Sequence

Accession: NZ_OQ821039.1
Description: Enterobacter hormaechei subsp. oharae strain 08B18CPO001 plasmid p08B18001_A_KPC, complete sequence
Source: refseq
Created at NCBI: Nov. 21, 2023

Host Taxonomy

Assigned Host: Enterobacter hormaechei (301102)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Enterobacter (547)
Species : Enterobacter_hormaechei (158836)
Strain:

NZ_OQ821029.1

Sequence

Accession: NZ_OQ821029.1
Description: Klebsiella quasipneumoniae subsp. quasipneumoniae strain 06C17CRGN002 plasmid p06C17002_C_KPC, complete sequence
Source: refseq
Created at NCBI: Nov. 21, 2023

Host Taxonomy

Assigned Host: Klebsiella quasipneumoniae (1667327)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_quasipneumoniae (1463165)
Strain:

NZ_OP378643.1

Sequence

Accession: NZ_OP378643.1
Description: Klebsiella michiganensis strain KLO00015 plasmid pKLO00015_8, complete sequence
Source: refseq
Created at NCBI: Feb. 20, 2023

Host Taxonomy

Assigned Host: Klebsiella michiganensis (1134687)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_michiganensis (1134687)
Strain:

CP139246.1

Sequence

Accession: CP139246.1
Description: Klebsiella pneumoniae strain ARLG-4622 plasmid pARLG-4622-3, complete sequence
Source: insd
Created at NCBI: Dec. 4, 2023

Host Taxonomy

Assigned Host: Klebsiella pneumoniae (573)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_pneumoniae (573)
Strain:

Biosample

Accession: 15869164

GEOGRAPHICAL INFORMATION

Original Query: USA,Midwest
Original Query Type: name
Address: USA,Midwest
Coordinates (Lat/Lon): 43.41/-106.28

ECOSYSTEM

Original Query: Homo sapiens,urine
Classification: host_associated,urinary_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore