Plasmid NZ_CP011603.1

Sequence

Nucleotide Information

Accession	NZ_CP011603.1
Description	Citrobacter freundii strain CAV1321 plasmid pCAV1321-1916, complete sequence
Source	refseq
Topology	circular
Length	1916 bp
GC Content	0.52 %
Created at NCBI	June 18, 2015

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter freundii (546)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_freundii (546)
Strain

Assembly

Genome Data Information

Accession	GCF_001022155.1
Assembly Coverage	115

Biosample

Curated Collection Information

Accession	3733741

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	38.14N;78.45W
Original Query Type	coordinates
Coordinates (Lat/Lon)	38.14/-78.45
Address	Aviation Drive, Deerwood, Albemarle County, Virginia, 22936, United States

ECOSYSTEM

Original Query	Homo sapiens,Urine/Genitourinary
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP074192.1	See Comparison
NZ_CP011651.1	See Comparison
NZ_CP037741.1	See Comparison
NZ_CP030349.1	See Comparison
OW968006.1	See Comparison
OW968153.1	See Comparison
OW848963.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW848927.1	See Comparison
OW848913.1	See Comparison
NZ_CP074192.1	See Comparison
OW849076.1	See Comparison
OW849044.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison
NZ_CP037741.1	See Comparison
NZ_CP011651.1	See Comparison
OW848963.1	See Comparison
NZ_CP030349.1	See Comparison
OW968153.1	See Comparison
OW968006.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW848927.1	See Comparison
OW848913.1	See Comparison
NZ_CP074192.1	See Comparison
OW849076.1	See Comparison
OW849044.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison
OW848963.1	See Comparison
NZ_CP011651.1	See Comparison
NZ_CP030349.1	See Comparison
OW968153.1	See Comparison
NZ_CP037741.1	See Comparison
OW968006.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW848927.1	See Comparison
OW848913.1	See Comparison
OW968006.1	See Comparison
OW849076.1	See Comparison
OW849044.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison
NZ_CP011651.1	See Comparison
NZ_CP011603.1	See Comparison
NZ_CP030349.1	See Comparison
NZ_CP074192.1	See Comparison
NZ_CP037741.1	See Comparison
OW968153.1	See Comparison
OW848963.1	See Comparison
OW848927.1	See Comparison
OW848913.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW849076.1	See Comparison
OW849044.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison
NZ_CP011651.1	See Comparison
NZ_CP074192.1	See Comparison
OW968153.1	See Comparison
NZ_CP037741.1	See Comparison
NZ_CP030349.1	See Comparison
OW849076.1	See Comparison
OW848913.1	See Comparison
OW849044.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison
OW968006.1	See Comparison
OW848963.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW848927.1	See Comparison
OW848963.1	See Comparison
NZ_CP037741.1	See Comparison
OW968153.1	See Comparison
NZ_CP074192.1	See Comparison
NZ_CP011651.1	See Comparison
NZ_CP030349.1	See Comparison
OW968006.1	See Comparison
OW848952.1	See Comparison
OW848945.1	See Comparison
OW848938.1	See Comparison
OW848927.1	See Comparison
OW849044.1	See Comparison
OW848913.1	See Comparison
OW849076.1	See Comparison
OW849029.1	See Comparison
OW849022.1	See Comparison
OW848994.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore