Plasmid CP125754.1

Sequence

Nucleotide Information

Accession CP125754.1
Description Klebsiella pneumoniae strain NU-CRE166 plasmid pNUCRE-166_4, complete sequence
Source insd
Topology circular
Length 36093 bp
GC Content 0.52 %
Created at NCBI May 15, 2023



Assembly

Genome Data Information

Accession GCA_016797255.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 17600204

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.8945N;87.6208W
Original Query Type coordinates
Coordinates (Lat/Lon) 41.89/-87.62
Address Feinberg Pavilion, 251, East Huron Street, Magnificent Mile, Near North Side, Chicago, Cook County, Illinois, 60611, United States

ECOSYSTEM
Original Query Homo sapiens,bronchoalveolar lavage
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074555.1 See Comparison
CP094909.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP025042.1 See Comparison
NZ_CP009774.1 See Comparison
CP006925.1 See Comparison
NZ_CP074555.1 See Comparison
CP128740.1 See Comparison
NZ_CP009774.1 See Comparison
CP067799.1 See Comparison
CP067548.1 See Comparison
CP094909.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP006925.1 See Comparison
CP128740.1 See Comparison
CP094909.1 See Comparison
NZ_CP025042.1 See Comparison
NZ_CP025042.1 See Comparison
CP128740.1 See Comparison
NZ_CP074555.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP009774.1 See Comparison
CP006925.1 See Comparison
NZ_CP074555.1 See Comparison
CP125754.1 See Comparison
CP094909.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP074555.1 See Comparison
NZ_CP009774.1 See Comparison
CP006925.1 See Comparison
CP128740.1 See Comparison
NZ_CP025042.1 See Comparison
CP094909.1 See Comparison
CP128740.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP009774.1 See Comparison
CP006925.1 See Comparison
NZ_CP025042.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP094909.1 See Comparison
NZ_CP074555.1 See Comparison
CP067642.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP067548.1 See Comparison
CP006925.1 See Comparison
NZ_CP009774.1 See Comparison
NZ_CP074555.1 See Comparison
NZ_CP025042.1 See Comparison
CP128740.1 See Comparison
CP067799.1 See Comparison
CP094909.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP009774.1 See Comparison
CP128740.1 See Comparison
NZ_CP025042.1 See Comparison
CP006925.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2