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v. 2024_05_31_v2
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Typing
Plasmid CP067642.1
Sequence
Nucleotide Information
Accession
CP067642.1
Description
Klebsiella pneumoniae strain ARLG-4857 plasmid pC587_5, complete sequence
Source
insd
Topology
circular
Length
36101 bp
GC Content
0.52 %
Created at NCBI
March 1, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_022435115.1
Assembly Coverage
273
Biosample
Curated Collection Information
Accession
15869032
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,South
Original Query Type
name
Coordinates (Lat/Lon)
33.31/-118.34
Address
USA,South
ECOSYSTEM
Original Query
Homo sapiens,wound
Classification
host_associated,wound
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP067643.1
CP067641.1
CP067640.1
CP067639.1
CP067638.1
Similar Plasmids
based on Mash distance
CP094909.1
See Comparison
CP067799.1
See Comparison
CP067741.1
See Comparison
CP067548.1
See Comparison
NZ_CP009774.1
See Comparison
CP006925.1
See Comparison
NZ_CP025042.1
See Comparison
CP128740.1
See Comparison
NZ_CP025042.1
See Comparison
CP125754.1
See Comparison
CP094909.1
See Comparison
CP067548.1
See Comparison
NZ_CP009774.1
See Comparison
NZ_CP074555.1
See Comparison
CP067799.1
See Comparison
CP067741.1
See Comparison
CP006925.1
See Comparison
CP128740.1
See Comparison
NZ_CP074555.1
See Comparison
CP125754.1
See Comparison
CP125754.1
See Comparison
CP094909.1
See Comparison
CP067548.1
See Comparison
NZ_CP009774.1
See Comparison
NZ_CP025042.1
See Comparison
CP067799.1
See Comparison
CP067741.1
See Comparison
CP006925.1
See Comparison
CP128740.1
See Comparison
CP067799.1
See Comparison
CP094909.1
See Comparison
NZ_CP074555.1
See Comparison
CP067741.1
See Comparison
NZ_CP009774.1
See Comparison
CP067548.1
See Comparison
NZ_CP025042.1
See Comparison
CP006925.1
See Comparison
CP128740.1
See Comparison
CP067548.1
See Comparison
NZ_CP074555.1
See Comparison
CP067799.1
See Comparison
CP067741.1
See Comparison
CP125754.1
See Comparison
CP094909.1
See Comparison
NZ_CP025042.1
See Comparison
NZ_CP009774.1
See Comparison
CP006925.1
See Comparison
CP125754.1
See Comparison
CP128740.1
See Comparison
CP094909.1
See Comparison
NZ_CP074555.1
See Comparison
CP067642.1
See Comparison
CP067799.1
See Comparison
CP067741.1
See Comparison
CP067548.1
See Comparison
NZ_CP009774.1
See Comparison
NZ_CP074555.1
See Comparison
CP006925.1
See Comparison
CP125754.1
See Comparison
NZ_CP025042.1
See Comparison
CP128740.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore