Plasmid CP006925.1

Sequence

Nucleotide Information

Accession CP006925.1
Description Klebsiella pneumoniae 30660/NJST258_1 plasmid pNJST258N3, complete sequence
Source insd
Topology circular
Length 36109 bp
GC Content 0.52 %
Created at NCBI March 19, 2014



Assembly

Genome Data Information

Accession GCF_000598005.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 3081502

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,urinary tract infection
Classification disease,host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074555.1 See Comparison
CP067741.1 See Comparison
CP094909.1 See Comparison
CP067642.1 See Comparison
CP067799.1 See Comparison
CP128740.1 See Comparison
CP067548.1 See Comparison
CP006925.1 See Comparison
NZ_CP009774.1 See Comparison
NZ_CP025042.1 See Comparison
CP067741.1 See Comparison
CP125754.1 See Comparison
NZ_CP074555.1 See Comparison
CP094909.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP009774.1 See Comparison
CP067799.1 See Comparison
NZ_CP074555.1 See Comparison
NZ_CP025042.1 See Comparison
CP128740.1 See Comparison
CP125754.1 See Comparison
CP094909.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067799.1 See Comparison
NZ_CP009774.1 See Comparison
CP067548.1 See Comparison
CP128740.1 See Comparison
NZ_CP025042.1 See Comparison
CP125754.1 See Comparison
NZ_CP074555.1 See Comparison
CP094909.1 See Comparison
CP067548.1 See Comparison
CP067799.1 See Comparison
CP128740.1 See Comparison
CP067741.1 See Comparison
NZ_CP025042.1 See Comparison
CP067642.1 See Comparison
NZ_CP009774.1 See Comparison
CP067799.1 See Comparison
CP125754.1 See Comparison
NZ_CP074555.1 See Comparison
CP094909.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP128740.1 See Comparison
CP067548.1 See Comparison
NZ_CP009774.1 See Comparison
NZ_CP025042.1 See Comparison
CP125754.1 See Comparison
NZ_CP009774.1 See Comparison
NZ_CP074555.1 See Comparison
CP094909.1 See Comparison
CP067799.1 See Comparison
CP067741.1 See Comparison
CP067642.1 See Comparison
CP067548.1 See Comparison
NZ_CP025042.1 See Comparison
CP128740.1 See Comparison
CP125754.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore