Plasmid CP125753.1

Sequence

Nucleotide Information

Accession CP125753.1
Description Klebsiella pneumoniae strain NU-CRE166 plasmid pNUCRE-166_3, complete sequence
Source insd
Topology circular
Length 81564 bp
GC Content 0.53 %
Created at NCBI May 15, 2023



Assembly

Genome Data Information

Accession GCA_016797255.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 17600204

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.8945N;87.6208W
Original Query Type coordinates
Coordinates (Lat/Lon) 41.89/-87.62
Address Feinberg Pavilion, 251, East Huron Street, Magnificent Mile, Near North Side, Chicago, Cook County, Illinois, 60611, United States

ECOSYSTEM
Original Query Homo sapiens,bronchoalveolar lavage
Classification bronchi,host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiANT(3'')-II-AAC(6')-IId bifunctional proteincopy
rgiTEM-10copy
PGAGrepAcopy
PGAGDUF2268 domain-containing putative Zn-dependent proteasecopy
PGAGIS91 family transposasecopy
PGAGhypothetical proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGrecombinase family proteincopy
PGAGTn3-like element Tn3 family transposasecopy
PGAGfrmRcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 108 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconKF954760IncFII8134681564plus100961.2100000000000001e-110405
relaxaseCP035180_00077MOBF7022770982plus94.048980381
relaxaseNC_021231_00058MOBF7099476252plus98.34610003376
mate-pair-formationNC_014312_00116MPF_F4504945351plus1001004.22e-61207
mate-pair-formationNC_022609_00081MPF_F5544456430plus95.1521000652
mate-pair-formationNC_019389_00080MPF_F5644657081plus99.0571008.53e-139435
mate-pair-formationNC_021654_00016MPF_F5713459095plus98.4719801240
mate-pair-formationNC_019165_00034MPF_F6198963344plus97.566990813
mate-pair-formationNC_023905_00125MPF_F6334766193plus99.68410001769
mate-pair-formationNC_021502_00150MPF_T6868270991plus98.05210001441
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2