Plasmid CP102114.1

Sequence

Nucleotide Information

Accession CP102114.1
Description Shigella sonnei strain 1527854 plasmid p1527854_2, complete sequence
Source insd
Topology circular
Length 86877 bp
GC Content 0.53 %
Created at NCBI Aug. 7, 2022



Assembly

Genome Data Information

Accession GCA_024582895.1
Assembly Coverage 60.4


Biosample

Curated Collection Information
Accession 23134804

PLASMID INFORMATION
Genotype ST245

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom,United Kingdom

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
CP104429.1 See Comparison
NZ_MW396864.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP107288.1 See Comparison
CP102114.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore