Plasmid CP104414.1

Sequence

Nucleotide Information

Accession CP104414.1
Description Shigella sonnei strain 1538007 plasmid p1538007_1, complete sequence
Source insd
Topology circular
Length 86877 bp
GC Content 0.53 %
Created at NCBI Sept. 14, 2022



Assembly

Genome Data Information

Accession GCA_021065985.2
Assembly Coverage 178


Biosample

Curated Collection Information
Accession 23569621

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom,United Kingdom

ECOSYSTEM
Original Query Homo sapiens,human
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP104429.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP107288.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP140621.1 See Comparison
CP102114.1 See Comparison
CP102114.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104414.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
CP102114.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
CP102114.1 See Comparison
NZ_CP140621.1 See Comparison
CP102114.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_CP107288.1 See Comparison
NZ_CP107288.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison
NZ_CP140621.1 See Comparison
NZ_MW396864.1 See Comparison
CP102114.1 See Comparison
NZ_MW396864.1 See Comparison
CP102114.1 See Comparison
CP104429.1 See Comparison
CP104424.1 See Comparison
CP104418.1 See Comparison
CP104411.1 See Comparison
CP104436.1 See Comparison
CP104432.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGPilN family type IVB pilus formation outer membrane proteincopy
PGAGpilO2copy
PGAGpilPcopy
PGAGATPase, T2SS/T4P/T4SS familycopy
PGAGtype II secretion system F family proteincopy
PGAGprepilin-type N-terminal cleavage/methylation domain-containing proteincopy
PGAGlytic transglycosylase domain-containing proteincopy
PGAGprepilin peptidasecopy
PGAGpilVcopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 106 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_013728_00087MOBP4910751824minus98.01310001767
mate-pair-formationNC_014843_00033MPF_I1475815591plus98.9211002.4199999999999998e-168523
mate-pair-formationNC_022992_00098MPF_I2225822605plus93.1031001.08e-48172
mate-pair-formationNC_012487_00131MPF_I2262023312plus99.5671001.17e-152476
mate-pair-formationNC_022371_00084MPF_I2332624297plus99.3831000580
mate-pair-formationNC_014843_00041MPF_I2563826348plus97.891001.08e-152476
mate-pair-formationNC_011754_00109MPF_I2634826875plus99.4321001.56e-100323
mate-pair-formationNC_007365_00035MPF_I2697027320plus89.744893.48e-51180
mate-pair-formationNC_014843_00047MPF_I3228133483plus1001000733
mate-pair-formationNC_011754_00087MPF_I4658348757plus99.0349501379
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2