Plasmid CP099288.1

Sequence

Nucleotide Information

Accession CP099288.1
Description Escherichia coli strain RHB03-E1-C04 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 42224 bp
GC Content 0.49 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029717845.1
Assembly Coverage 135


Biosample

Curated Collection Information
Accession 15488496

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled sediment sample collected from floor of pig farm
Classification anthropogenic,cell_culture,farm,sediment
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
NZ_CP042589.1 See Comparison
CP057392.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP057386.1 See Comparison
CP099144.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099144.1 See Comparison
NZ_CP042589.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP058037.1 See Comparison
NZ_CP073937.1 See Comparison
NZ_CP042589.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
NZ_CP042589.1 See Comparison
NZ_CP073937.1 See Comparison
NZ_CP042589.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
CP058042.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
NZ_CP073937.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP057392.1 See Comparison
NZ_CP042589.1 See Comparison
CP058037.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP057386.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore