Plasmid NZ_CP042589.1

Sequence

Nucleotide Information

Accession NZ_CP042589.1
Description Escherichia coli strain PK6 plasmid pRHEcCUB-1, complete sequence
Source refseq
Topology circular
Length 42683 bp
GC Content 0.49 %
Created at NCBI Oct. 7, 2019



Assembly

Genome Data Information

Accession GCF_008823185.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 12512712

PLASMID INFORMATION
Genotype ST1695

GEOGRAPHICAL INFORMATION
Original Query Cuba,Matanzas
Original Query Type name
Coordinates (Lat/Lon) 23.05/-81.58
Address Cuba,Matanzas

ECOSYSTEM
Original Query Sus scrofa domesticus,whole organism,Healthy pig from farm
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP042589.1 See Comparison
CP099144.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
NZ_CP073937.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
CP058037.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
NZ_CP073937.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
CP058042.1 See Comparison
CP057392.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
CP057392.1 See Comparison
NZ_CP073937.1 See Comparison
CP057386.1 See Comparison
CP057004.1 See Comparison
CP056999.1 See Comparison
CP056993.1 See Comparison
NZ_CP073937.1 See Comparison
CP058037.1 See Comparison
CP099144.1 See Comparison
CP099149.1 See Comparison
CP099160.1 See Comparison
CP099288.1 See Comparison
CP058042.1 See Comparison
CP058048.1 See Comparison
CP058054.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore