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v. 2024_05_31_v2
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Typing
Plasmid CP099149.1
Sequence
Nucleotide Information
Accession
CP099149.1
Description
Escherichia coli strain RHB28-SO-C01 plasmid unnamed2, complete sequence
Source
insd
Topology
circular
Length
44007 bp
GC Content
0.49 %
Created at NCBI
April 13, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_029718185.1
Assembly Coverage
134
Biosample
Curated Collection Information
Accession
15488600
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Pooled soil sample collected from floor of pig farm
Classification
anthropogenic,cell_culture,farm,soil
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP099151.1
CP099150.1
CP099148.1
Similar Plasmids
based on Mash distance
CP058037.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
CP058042.1
See Comparison
CP058042.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
CP099144.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
NZ_CP073937.1
See Comparison
NZ_CP042589.1
See Comparison
CP058037.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
CP058042.1
See Comparison
CP099144.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
NZ_CP042589.1
See Comparison
CP058037.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
NZ_CP073937.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
NZ_CP073937.1
See Comparison
CP099144.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
NZ_CP042589.1
See Comparison
CP058037.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
NZ_CP073937.1
See Comparison
CP058042.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
CP099144.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
CP058037.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
NZ_CP042589.1
See Comparison
CP099144.1
See Comparison
CP058042.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
NZ_CP073937.1
See Comparison
NZ_CP042589.1
See Comparison
CP057392.1
See Comparison
CP057386.1
See Comparison
CP057004.1
See Comparison
CP058037.1
See Comparison
CP056999.1
See Comparison
CP056993.1
See Comparison
CP058042.1
See Comparison
CP058048.1
See Comparison
CP058054.1
See Comparison
CP099144.1
See Comparison
CP099149.1
See Comparison
CP099160.1
See Comparison
CP099288.1
See Comparison
NZ_CP073937.1
See Comparison
NZ_CP042589.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore