Plasmid CP099289.1

Sequence

Nucleotide Information

Accession CP099289.1
Description Escherichia coli strain RHB03-E1-C04 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 8136 bp
GC Content 0.43 %
Created at NCBI April 13, 2023



Assembly

Genome Data Information

Accession GCA_029717845.1
Assembly Coverage 135


Biosample

Curated Collection Information

Accession 15488496

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled sediment sample collected from floor of pig farm
Classification anthropogenic,cell_culture,farm,sediment
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP099145.1 See Comparison
CP058038.1 See Comparison
CP057393.1 See Comparison
CP057387.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP058043.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP058038.1 See Comparison
CP057393.1 See Comparison
CP057387.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP099145.1 See Comparison
CP099150.1 See Comparison
CP058043.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP099150.1 See Comparison
CP058038.1 See Comparison
CP057393.1 See Comparison
CP057387.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP058043.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP058038.1 See Comparison
CP099145.1 See Comparison
CP099150.1 See Comparison
CP058043.1 See Comparison
CP057393.1 See Comparison
CP057387.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP099145.1 See Comparison
CP099145.1 See Comparison
CP099150.1 See Comparison
CP099289.1 See Comparison
CP057393.1 See Comparison
CP057387.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP058043.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP058038.1 See Comparison
CP099150.1 See Comparison
CP058038.1 See Comparison
CP057393.1 See Comparison
CP057005.1 See Comparison
CP057000.1 See Comparison
CP056994.1 See Comparison
CP057387.1 See Comparison
CP058043.1 See Comparison
CP058049.1 See Comparison
CP058055.1 See Comparison
CP099145.1 See Comparison
CP099150.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGglycosyltransferase family 2 proteincopy
PGAGIS1 family transposasecopy
PGAGlipopolysaccharide biosynthesis proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP008720MOBP62086382plus96.5711002.6e-76291
repliconEF088686_00008rep_cluster_233557336242minus94.51960785
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries