Plasmid CP099289.1
Sequence
Nucleotide Information
Accession | CP099289.1 |
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Description | Escherichia coli strain RHB03-E1-C04 plasmid unnamed2, complete sequence |
Source | insd |
Topology | circular |
Length | 8136 bp |
GC Content | 0.43 % |
Created at NCBI | April 13, 2023 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 15488496 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | United Kingdom |
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Original Query Type | name |
Coordinates (Lat/Lon) | 54.70/-3.28 |
Address | United Kingdom |
ECOSYSTEM
Original Query | culture,Pooled sediment sample collected from floor of pig farm |
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Classification | anthropogenic,cell_culture,farm,sediment |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | glycosyltransferase family 2 protein | copy | ||
PGAG | IS1 family transposase | copy | ||
PGAG | lipopolysaccharide biosynthesis protein | copy | ||
PGAG | helix-turn-helix domain-containing protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
MOB-typer | MOBP | copy | ||
MOB-typer | rep_cluster_2335 | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
oriT | CP008720 | MOBP | 6208 | 6382 | plus | 96.571 | 100 | 2.6e-76 | 291 |
replicon | EF088686_00008 | rep_cluster_2335 | 5733 | 6242 | minus | 94.51 | 96 | 0 | 785 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries