Plasmid CP099074.1

Sequence

Nucleotide Information

Accession	CP099074.1
Description	Escherichia coli strain RHB43-SE-C04 plasmid unnamed2, complete sequence
Source	insd
Topology	circular
Length	107495 bp
GC Content	0.51 %
Created at NCBI	April 13, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_029718905.1
Assembly Coverage	165

Biosample

Curated Collection Information

Accession	15488647

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Pooled sediment sample collected from floor of poultry farm
Classification	anthropogenic,cell_culture,farm,soil
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

CP099073.1

Similar Plasmids

based on Mash distance

NZ_OL689363.1	See Comparison
NZ_CP099772.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_CP094200.1	See Comparison
NZ_MW077910.1	See Comparison
NZ_CP091678.1	See Comparison
CP067953.1	See Comparison
NZ_LT985280.1	See Comparison
NZ_MH847571.1	See Comparison
LC567094.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP053677.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_MN419438.1	See Comparison
CP059924.1	See Comparison
NZ_MN419433.1	See Comparison
NZ_MN419434.1	See Comparison
NZ_MN419436.1	See Comparison
CP099061.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_OL689363.1	See Comparison
NZ_CP099772.1	See Comparison
NZ_CP091678.1	See Comparison
NZ_MW077910.1	See Comparison
CP067953.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_CP094200.1	See Comparison
NZ_MH847571.1	See Comparison
LC567094.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP053677.1	See Comparison
CP059924.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_LT985280.1	See Comparison
NZ_MN419436.1	See Comparison
NZ_MN419438.1	See Comparison
NZ_MN419433.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_MN419434.1	See Comparison
CP099061.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_OL689363.1	See Comparison
NZ_CP099772.1	See Comparison
NZ_CP094200.1	See Comparison
NZ_MW077910.1	See Comparison
NZ_CP053677.1	See Comparison
CP067953.1	See Comparison
LC567094.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP091678.1	See Comparison
CP059924.1	See Comparison
NZ_MH847571.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_LT985280.1	See Comparison
NZ_MN419436.1	See Comparison
NZ_MN419438.1	See Comparison
NZ_MN419433.1	See Comparison
CP099061.1	See Comparison
NZ_MN419434.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099074.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_OL689363.1	See Comparison
NZ_CP094200.1	See Comparison
NZ_MW077910.1	See Comparison
NZ_CP099772.1	See Comparison
LC567094.1	See Comparison
NZ_CP091678.1	See Comparison
CP067953.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP053677.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_MH847571.1	See Comparison
NZ_MN419434.1	See Comparison
NZ_LT985280.1	See Comparison
CP059924.1	See Comparison
NZ_MN419436.1	See Comparison
NZ_MN419438.1	See Comparison
NZ_MN419433.1	See Comparison
CP099061.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_OL689363.1	See Comparison
NZ_CP094200.1	See Comparison
LC567094.1	See Comparison
NZ_MW077910.1	See Comparison
NZ_CP099772.1	See Comparison
NZ_CP091678.1	See Comparison
CP067953.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP053677.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_MH847571.1	See Comparison
CP099061.1	See Comparison
NZ_LT985280.1	See Comparison
CP059924.1	See Comparison
NZ_MN419434.1	See Comparison
NZ_MN419436.1	See Comparison
NZ_MN419438.1	See Comparison
NZ_MN419433.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_OL689363.1	See Comparison
NZ_CP099772.1	See Comparison
NZ_CP094199.1	See Comparison
NZ_CP094200.1	See Comparison
NZ_CP091678.1	See Comparison
NZ_MW077910.1	See Comparison
CP067953.1	See Comparison
CP059924.1	See Comparison
NZ_MH847571.1	See Comparison
LC567094.1	See Comparison
LC567093.1	See Comparison
LC567090.1	See Comparison
LC567084.1	See Comparison
LC567083.1	See Comparison
LC567058.1	See Comparison
LC567057.1	See Comparison
LC567056.1	See Comparison
LC567050.1	See Comparison
NZ_CP053677.1	See Comparison
NZ_KT779550.1	See Comparison
NZ_LT985280.1	See Comparison
NZ_MN419434.1	See Comparison
NZ_MN419438.1	See Comparison
NZ_MN419433.1	See Comparison
CP099061.1	See Comparison
CP099064.1	See Comparison
CP099067.1	See Comparison
CP099070.1	See Comparison
CP099077.1	See Comparison
CP099091.1	See Comparison
CP099094.1	See Comparison
CP099097.1	See Comparison
NZ_MN419436.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore